Literature DB >> 34538504

The evolution of the GALactose utilization pathway in budding yeasts.

Marie-Claire Harrison1, Abigail L LaBella1, Chris Todd Hittinger2, Antonis Rokas3.   

Abstract

The Leloir galactose utilization or GAL pathway of budding yeasts, including that of the baker's yeast Saccharomyces cerevisiae and the opportunistic human pathogen Candida albicans, breaks down the sugar galactose for energy and biomass production. The GAL pathway has long served as a model system for understanding how eukaryotic metabolic pathways, including their modes of regulation, evolve. More recently, the physical linkage of the structural genes GAL1, GAL7, and GAL10 in diverse budding yeast genomes has been used as a model for understanding the evolution of gene clustering. In this review, we summarize exciting recent work on three different aspects of this iconic pathway's evolution: gene cluster organization, GAL gene regulation, and the population genetics of the GAL pathway.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  fungi; galactose; gene cluster; gene regulation; horizontal gene transfer; polymorphism; regulatory rewiring

Mesh:

Substances:

Year:  2021        PMID: 34538504      PMCID: PMC8678326          DOI: 10.1016/j.tig.2021.08.013

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  47 in total

1.  Molecular evidence for an ancient duplication of the entire yeast genome.

Authors:  K H Wolfe; D C Shields
Journal:  Nature       Date:  1997-06-12       Impact factor: 49.962

Review 2.  A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae.

Authors:  M Johnston
Journal:  Microbiol Rev       Date:  1987-12

3.  ARA1 regulates not only l-arabinose but also d-galactose catabolism in Trichoderma reesei.

Authors:  Tiziano Benocci; Maria Victoria Aguilar-Pontes; Roland Sándor Kun; Bernhard Seiboth; Ronald P de Vries; Paul Daly
Journal:  FEBS Lett       Date:  2017-12-19       Impact factor: 4.124

4.  Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts.

Authors:  Chris Todd Hittinger; Antonis Rokas; Sean B Carroll
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-20       Impact factor: 11.205

Review 5.  Galactose metabolism in yeast-structure and regulation of the leloir pathway enzymes and the genes encoding them.

Authors:  Christopher A Sellick; Robert N Campbell; Richard J Reece
Journal:  Int Rev Cell Mol Biol       Date:  2008       Impact factor: 6.813

6.  A new system for comparative functional genomics of Saccharomyces yeasts.

Authors:  Amy A Caudy; Yuanfang Guan; Yue Jia; Christina Hansen; Chris DeSevo; Alicia P Hayes; Joy Agee; Juan R Alvarez-Dominguez; Hugo Arellano; Daniel Barrett; Cynthia Bauerle; Namita Bisaria; Patrick H Bradley; J Scott Breunig; Erin Bush; David Cappel; Emily Capra; Walter Chen; John Clore; Peter A Combs; Christopher Doucette; Olukunle Demuren; Peter Fellowes; Sam Freeman; Evgeni Frenkel; Daniel Gadala-Maria; Richa Gawande; David Glass; Samuel Grossberg; Anita Gupta; Latanya Hammonds-Odie; Aaron Hoisos; Jenny Hsi; Yu-Han Huang Hsu; Sachi Inukai; Konrad J Karczewski; Xiaobo Ke; Mina Kojima; Samuel Leachman; Danny Lieber; Anna Liebowitz; Julia Liu; Yufei Liu; Trevor Martin; Jose Mena; Rosa Mendoza; Cameron Myhrvold; Christian Millian; Sarah Pfau; Sandeep Raj; Matt Rich; Joe Rokicki; William Rounds; Michael Salazar; Matthew Salesi; Rajani Sharma; Sanford Silverman; Cara Singer; Sandhya Sinha; Max Staller; Philip Stern; Hanlin Tang; Sharon Weeks; Maxwell Weidmann; Ashley Wolf; Carmen Young; Jie Yuan; Christopher Crutchfield; Megan McClean; Coleen T Murphy; Manuel Llinás; David Botstein; Olga G Troyanskaya; Maitreya J Dunham
Journal:  Genetics       Date:  2013-07-12       Impact factor: 4.562

7.  A single Gal4-like transcription factor activates the Crabtree effect in Komagataella phaffii.

Authors:  Özge Ata; Corinna Rebnegger; Nadine E Tatto; Minoska Valli; Teresa Mairinger; Stephan Hann; Matthias G Steiger; Pınar Çalık; Diethard Mattanovich
Journal:  Nat Commun       Date:  2018-11-21       Impact factor: 14.919

Review 8.  Sugar Sensing and Signaling in Candida albicans and Candida glabrata.

Authors:  Mieke Van Ende; Stefanie Wijnants; Patrick Van Dijck
Journal:  Front Microbiol       Date:  2019-01-30       Impact factor: 5.640

9.  The origin and adaptive evolution of domesticated populations of yeast from Far East Asia.

Authors:  Shou-Fu Duan; Pei-Jie Han; Qi-Ming Wang; Wan-Qiu Liu; Jun-Yan Shi; Kuan Li; Xiao-Ling Zhang; Feng-Yan Bai
Journal:  Nat Commun       Date:  2018-07-12       Impact factor: 14.919

10.  Giant GAL gene clusters for the melibiose-galactose pathway in Torulaspora.

Authors:  Anjan Venkatesh; Anthony L Murray; Aisling Y Coughlan; Kenneth H Wolfe
Journal:  Yeast       Date:  2020-12-07       Impact factor: 3.239

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  2 in total

1.  Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics.

Authors:  Grace Avecilla; Julie N Chuong; Fangfei Li; Gavin Sherlock; David Gresham; Yoav Ram
Journal:  PLoS Biol       Date:  2022-05-27       Impact factor: 9.593

Review 2.  Past, Present, and Future Perspectives on Whey as a Promising Feedstock for Bioethanol Production by Yeast.

Authors:  Jing Zou; Xuedong Chang
Journal:  J Fungi (Basel)       Date:  2022-04-12
  2 in total

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