| Literature DB >> 34531324 |
Aditya S Vaidya1,2, Francis C Peterson3, James Eckhardt1,2, Zenan Xing1,2, Sang-Youl Park1,2, Wim Dejonghe1,2, Jun Takeuchi4,5, Oded Pri-Tal6, Julianna Faria1,2, Dezi Elzinga1,2, Brian F Volkman3, Yasushi Todoroki4,5, Assaf Mosquna6, Masanori Okamoto7, Sean R Cutler8,2.
Abstract
Abscisic acid (ABA) is a key plant hormone that mediates both plant biotic and abiotic stress responses and many other developmental processes. ABA receptor antagonists are useful for dissecting and manipulating ABA's physiological roles in vivo. We set out to design antagonists that block receptor-PP2C interactions by modifying the agonist opabactin (OP), a synthetically accessible, high-affinity scaffold. Click chemistry was used to create an ∼4,000-member library of C4-diversified opabactin derivatives that were screened for receptor antagonism in vitro. This revealed a peptidotriazole motif shared among hits, which we optimized to yield antabactin (ANT), a pan-receptor antagonist. An X-ray crystal structure of an ANT-PYL10 complex (1.86 Å) reveals that ANT's peptidotriazole headgroup is positioned to sterically block receptor-PP2C interactions in the 4' tunnel and stabilizes a noncanonical closed-gate receptor conformer that partially opens to accommodate ANT binding. To facilitate binding-affinity studies using fluorescence polarization, we synthesized TAMRA-ANT. Equilibrium dissociation constants for TAMRA-ANT binding to Arabidopsis receptors range from ∼400 to 1,700 pM. ANT displays improved activity in vivo and disrupts ABA-mediated processes in multiple species. ANT is able to accelerate seed germination in Arabidopsis, tomato, and barley, suggesting that it could be useful as a germination stimulant in species where endogenous ABA signaling limits seed germination. Thus, click-based diversification of a synthetic agonist scaffold allowed us to rapidly develop a high-affinity probe of ABA-receptor function for dissecting and manipulating ABA signaling.Entities:
Keywords: abscisic acid; antagonist; click chemistry; ligand; receptor
Mesh:
Substances:
Year: 2021 PMID: 34531324 PMCID: PMC8463862 DOI: 10.1073/pnas.2108281118
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 11.205
Fig. 1.Structures of ABA, PanMe, and AA1.
Fig. 2.Rapid discovery of 4-OP-triazole ABA receptor antagonists. (A) Comparison of agonist and antagonist mechanisms. ABA stabilizes a PYL/RCAR–PP2C complex and inactivates PP2C activity. Antagonists that disrupt PP2C interactions block agonist-mediated PP2C inactivation. (B) Discovery of ANT using click chemistry ligand diversification. The ABA receptor agonist OP was diversified at its C4 nitrile position to identify substituents that disrupt PP2C interactions in the 4′ tunnel. OPZ is a C4-azido derivative of OP; OPZ was clicked against a collection of alkynes and the reactions were screened in vitro to identify antagonists. Subsequent optimization led to ANT. (C) ANT is a potent ABA receptor antagonist. The potency of ANT, PanMe, and AA1 receptor antagonism was quantified by measuring the antagonist-mediated recovery of PP2C activity in the presence of saturating ABA (5,000 nM), PYL/RCAR, and ΔN-HAB1 proteins (both at 25 nM). EC50 values were obtained by nonlinear fits of dose–response data to the four parameter log-logistic equation using the drc R package (47); assays were conducted in triplicate. The full dataset for all Arabidopsis and wheat receptors is presented in . (D) ANT is active in vivo. Antagonist-dependent recovery of seedling establishment in the presence of ANT, PanME, or AA1 (+1,000 nM ABA). Seedling growth was measured by quantifying the green cotyledon area normalized to seed number 4 d after stratification; EC50 values indicate the concentration of the antagonist at 50% maximal green pixel area relative to mock control (1,000 nM ABA); errors indicate SD of two independent experiments each conducted in triplicate.
Fig. 3.ANT–receptor binding is stabilized by numerous direct contacts and occludes the 4′ tunnel. (A) The cocrystal structure of ANT bound to PYL10, highlighting direct receptor–ligand contacts, as determined using PLIP analyses (48). The dashes represent polar contacts established by ANT with PYL10 and include direct hydrogen bonds, which range in distance from 2.7 to 3.8 Å (see for all distances), π–π parallel stacking (distances 4.1 and 4.2 Å angle 14.07° and 14.19° and offset 1.73 and 1.64 Å), and π–cation interactions (distances 3.9 and 4.3 Å and offset 0.57 and 1.95 Å) interactions and salt bridge (2.8 Å). (B) Trp-lock insertion from HAB1 into the 4′ tunnel formed in an activated PYL2–ABA analog–HAB1 ternary complex (PDB, accession no. 5OR2). (C) ANT’s quinoline ring occupies the 4′ tunnel that would normally be occupied by the Trp-lock residue, sterically blocking access of Trp from HAB1. Noted is the solvent-exposed C7 position on the quinoline ring targeted to create TAMRA–ANT.
Fig. 4.ANT is a high-affinity ligand. (A) Principle of fluorescence polarization-based receptor-binding assays with TAMRA–ANT. Unbound probe polarization is low, due to rapid tumbling in solution; binding of the probe to protein slows tumbling rates and increases fluorescence polarization. (B) Determination of equilibrium ABA receptor binding constants for TAMRA–ANT by FP. Delta millipolarization (mP) values for probe (5 nM) as a function of different ABA receptor concentrations (0.8 to 50 nM) in FP assay buffer at 25 °C under equilibrium binding conditions (>4 t1/2). We note that the TAMRA–ANT concentrations required for sufficient mP signal generation in these assays are not <
Fig. 5.ANT potently blocks ABA signaling in planta. (A) ANT increases transpiration in multiple species. Infrared images of 6-wk-old tomato seedlings (UC82), 3-wk-old wheat seedlings (Patwin 515), and 3-wk-old wild-type Arabidopsis (Col-0) plants treated with ANT (100 µM) and imaged by thermography either 2 h (tomato and wheat) or 48 h (Arabidopsis) postapplication. Statistical analyses were performed using unpaired t tests (n = 8 for tomato, n = 9 for wheat, and n = 10 for Arabidopsis). Error bars indicate SD. *** indicates P < 0.0001. (B) ANT treatments phenocopy abi1-1 mutant phenotypes. Infrared images of wild-type Arabidopsis plants continuously exposed to ANT (100 µM) or mock compared to mock-treated abi1-1. Images were collected 3 wk after continuous exposure. Dunnett tests were used to obtain multiplicity-adjusted P values for treatment effects relative to mock treatments (n = 12). (C and D) ns indicates not statistically significant. ANT blocks osmotic stress–induced gene expression. (C) Five-day-old marker line seedlings were treated with 400 mM mannitol for 6 h, with coapplication of either 2.5 µM ANT, PanME, AA1, or mock treatment. (Scale bars, 0.5 mm.) The full dataset for this experiment is presented in . (D) Comparison of transcript levels of RD29B and MAPKKK18 (normalized to PEX4) measured by qRT-PCR of 8-d-old Arabidopsis seedlings pretreated with either dimethyl sulfoxide (DMSO) or 25 µM ANT for 4 h and then exposed to either DMSO (−) or 25 µM ANT(+) in the presence (+) or absence (−) of 20% PEG for another 6 h. * indicates P < 0.05 for indicated comparisons. (E) ANT accelerates seed germination. Seed germination was monitored for seeds plated on 1/2 Murashige & Skoog (MS), 0.7% agar plates containing DMSO (mock treated) or 100 µM ANT (barley) or 25 µM ANT (tomato). Time-response data were fit to a log-logistic model using the drc package to infer ET50 values; however, barley under mock treatment never reached 50% germination. ET50 significantly differs between ANT and mock tomato treatments (two-sample t test, P < 0.01, n = 3) and the percent germination after 4 d significantly differs between ANT and mock-treated Palmella landrace (two-sample t test, P = 0.001, n = 3 for ANT, n = 6 for mock). Data for both landraces tested (Morex and Palmella) are shown in . (F) ANT alleviates the effects of thermoinhibition in Arabidopsis. The ET50 values inferred from this experiment are shown in and were generated by quantifying germination over time for seeds plated on 1/2 MS, 0.7% agar plates containing DMSO (mock treated) or 30 µM test chemicals either at 22 °C or after exposure to heat stress (37 °C for 48 h). Error bars indicate the SEM. Under heat stress, ANT and fluridone ET50 values differ from mock (pairwise two-sample t test with Bonferroni correction, P < 0.001, n = 5 for ANT and fluridone, n = 4 for mock), and under control conditions ANT ET50 significantly differs from fluridone and mock treatments (pairwise two-sample t test with Bonferroni correction, P < 0.001, n = 5 for ANT and fluridone, n = 4 for mock).