| Literature DB >> 34528724 |
Yulian Fang1, Yanzhi Zhang2, Hong Wang2, Ouyan Shi3, Wei Wang1, Mengzhu Hou1, Lu Wang1, Jinying Wu1, Yu Zhao4.
Abstract
Norovirus (NoV) is the leading cause of acute gastroenteritis (AGE) worldwide. Globally, the GII.4 Sydney 2012 strain has predominated since 2012, although GII.4 variant strains have caused AGE outbreaks in China. Recent patterns of NoV genotype distributions in 6011 children with AGE in Tianjin, China were investigated. NoV was detected using real-time reverse-transcriptase polymerase chain reaction and sequencing of partial sequences of the viral capsid gene. NoV genotypes were determined, and phylogenetic analysis was conducted. Epidemiological and clinical data were compared between children infected with different NoV genotypes. NoV was detected in 27.6% of the specimens tested. GII.4 strains comprised 49.4% infections, followed by GII.3 at 39.9%. Genotypes GII.2, GII.13, GII.17, GII.1, GII.6, and GII.14 were also detected. NoV was detected during most of the year, with a peak season of cases in the winter. Diarrhea, vomiting, fever, abdominal pain, and dehydration were present in patients with NoV infection. The main genotypes were GII.4 and GII.3, with a slight increase in GII.2, beginning in March 2017. Among the GII.4 strains, GII.4 Sydney 2012 was the only epidemic strain in Tianjin. Patients with GII.4 genotypes were more likely to present with diarrhea and vomiting than those with GII.3. Children with GII. Others were prone to suffered from dehydration and abdominal pain than those with GII.3. NoV GII has become the main cause of viral AGE in Tianjin, China. The predominant genotypes of NoV were GII.4 and GII.3. Identification of emerging genotypes is crucial for the prevention and control of NoV-caused AGE.Entities:
Keywords: acute gastroenteritis; capsid; children; genetic diversity; genotype; norovirus
Mesh:
Substances:
Year: 2021 PMID: 34528724 PMCID: PMC9292362 DOI: 10.1002/jmv.27340
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 20.693
Genogroups of NoV detected in AGE patients from 2017 to 2019 in Tianjin, China
| Date | AGE cases | AGE NoV infections | GII | |
|---|---|---|---|---|
|
| % | |||
| 17‐Jan | 30 | 20 | 13 | 65 |
| 17‐Feb | 51 | 19 | 12 | 63.2 |
| 17‐Mar | 73 | 16 | 12 | 75 |
| 17‐Apr | 66 | 14 | 14 | 100 |
| 17‐May | 71 | 15 | 15 | 100 |
| 17‐Jun | 72 | 14 | 10 | 71.4 |
| 17‐Jul | 45 | 4 | 4 | 100 |
| 17‐Aug | 31 | 4 | 3 | 75 |
| 17‐Sep | 14 | 2 | 2 | 100 |
| 17‐Oct | 32 | 5 | 3 | 60 |
| 17‐Nov | 90 | 40 | 11 | 27.5 |
| 17‐Dec | 183 | 88 | 64 | 72.7 |
| 18‐Jan | 198 | 66 | 42 | 63.6 |
| 18‐Feb | 179 | 41 | 25 | 61 |
| 18‐Mar | 224 | 71 | 43 | 60.6 |
| 18‐Apr | 194 | 47 | 19 | 40.4 |
| 18‐May | 153 | 31 | 20 | 64.5 |
| 18‐Jun | 160 | 24 | 12 | 50 |
| 18‐Jul | 127 | 5 | 0 | 0 |
| 18‐Aug | 102 | 4 | 2 | 50 |
| 18‐Sep | 73 | 8 | 1 | 12.5 |
| 18‐Oct | 106 | 22 | 3 | 13.6 |
| 18‐Nov | 276 | 123 | 70 | 56.9 |
| 18‐Dec | 345 | 166 | 72 | 43.4 |
| 19‐Jan | 421 | 186 | 83 | 44.6 |
| 19‐Feb | 362 | 114 | 55 | 48.2 |
| 19‐Mar | 345 | 114 | 49 | 43 |
| 19‐Apr | 276 | 74 | 22 | 30 |
| 19‐May | 272 | 47 | 16 | 34 |
| 19‐Jun | 260 | 35 | 6 | 8.6 |
| 19‐Jul | 206 | 12 | 0 | 0 |
| 19‐Aug | 206 | 4 | 0 | 0 |
| 19‐Sep | 178 | 16 | 4 | 25 |
| 19‐Oct | 155 | 36 | 16 | 44.4 |
| 19‐Nov | 223 | 83 | 41 | 49.4 |
| 19‐Dec | 212 | 88 | 21 | 23.9 |
| Total | 6011 | 1658 | 785 | 47.3 |
Abbreviations: AGE, acute gastroenteritis; NoV, norovirus.
Demographic characteristics of the NoV‐AGE patients in Tianjin, 2017–2019
| AGE patients ( | NoV‐AGE patients ( | Detection rate (%) |
|
| |
|---|---|---|---|---|---|
| Gender | |||||
| Male | 3674 | 1018 | 27.7 | 0.074 | 0.785 |
| Female | 2337 | 640 | 27.4 | ||
| Age‐group | |||||
| 0–6 months | 1317 | 290 | 22 | ||
| 7–12 months | 2590 | 830 | 32 | ||
| 13–36 months | 1169 | 352 | 30.1 | ||
| 37–84 months | 629 | 127 | 20.2 | 77.744 | 0.000 |
| ≥85 months | 306 | 59 | 19.3 | ||
| Year | |||||
| 2017 | 758 | 241 | 31.8 | ||
| 2018 | 2137 | 608 | 28.5 | 11.631 | 0.003 |
| 2019 | 3116 | 809 | 26 | ||
| Season | |||||
| Spring (Mar–May) | 1674 | 429 | 25.6 | ||
| Summer (Jun–Aug) | 1209 | 106 | 8.8 | ||
| Autumn (Sep–Nov) | 1147 | 335 | 29.2 | 366.485 | 0.000 |
| Winter (Dec–Feb) | 1981 | 788 | 39.8 | ||
| Total | 6011 | 1658 |
Note: The bold values indicates p < 0.05.
Abbreviations: AGE, acute gastroenteritis; NoV, norovirus
Figure 1Monthly distribution of NoV genotypes in children with AGE in Tianjin from 2017 to 2019. NoV, Norovirus
Demographic characteristics of GII NoV‐AGE patients with different genotypes
| GII.3 ( | GII.4 ( | GII. Others ( |
|
| |
|---|---|---|---|---|---|
| Age‐group | |||||
| 0–6 months | 76 (24.3) | 35 (9.0) | 8 (9.5) | ||
| 7–12 months | 146 (46.6) | 219 (56.4) | 35 (41.7) | 75.2 | 0.000 |
| 13–36 months | 70 (22.4) | 100 (25.8) | 18 (21.4) | ||
| 37–84 months | 14 (4.5) | 28 (7.2) | 12 (14.3) | ||
| ≥85 months | 7 (2.2) | 6 (1.6) | 11 (13.1) | ||
| Gender | |||||
| Male | 192 (61.3) | 237 (61.1) | 44 (52.4) | 2.440 | 0.295 |
| Female | 121 (38.7) | 151 (38.9) | 40 (47.6) | ||
| Year | |||||
| 2017 | 57 (18.2) | 72 (18.6) | 34 (40.5) | ||
| 2018 | 147 (47) | 128 (33.0) | 34 (40.5) | 44.540 | 0.000 |
| 2019 | 109 (34.8) | 188 (48.5) | 16 (19.0) | ||
| Season | |||||
| Spring (Mar–May) | 133 (42.5) | 58 (14.9) | 19 (22.6) | ||
| Summer (Jun–Aug) | 10 (3.2) | 3 (0.8) | 24 (28.6) | 245.263 | 0.000 |
| Autumn (Sep–Nov) | 12 (3.8) | 116 (29.9) | 23 (27.4) | ||
| Winter (Dec–Feb) | 158 (50.5) | 211(54.4) | 18 (21.4) | ||
| Total | 313 | 388 | 84 |
Note: The bold values indicates p < 0.05.
Abbreviations: AGE, acute gastroenteritis; NoV, norovirus
Clinical manifestation of GII NoV‐AGE patients with different genotypes
| GII.3 ( | GII.4 ( | GII. Others (n, %) |
|
| ||
|---|---|---|---|---|---|---|
| Diarrheal | ||||||
| Yes | 164 (52.4) | 254 (65.5) | 45 (53.6) | 13.366 |
| |
| No | 149 (47.6) | 134 (34.5) | 39 (46.4) | |||
| Severity of diarrheal | ||||||
| 1–2 times per day | 95 (57.9) | 120 (47.2) | 18 (40) | |||
| 3–4 times per day | 28 (17.1) | 64 (25.2) | 14 (31.1) | 7.985 | 0.092 | |
| >5 times per day | 41 (25) | 70 (27.6) | 13 (28.9) | |||
| Vomiting | ||||||
| Yes | 122 (39.0) | 226 (58.2) | 43 (51.2) | 25.804 |
| |
| No | 191 (61.0) | 162 (41.8) | 41 (48.8) | |||
| Severity of vomiting | ||||||
| 1–2 times per day | 80 (65.6) | 110 (48.7) | 26 (60.5) | |||
| 3–4 times per day | 23 (18.9) | 44 (19.5) | 5 (11.6) | 13.581 |
| |
| >5 times per day | 19 (15.6) | 72 (31.8) | 12 (27.9) | |||
| Fever (>38°C) | ||||||
| Yes | 191 (61.0) | 231 (59.5) | 40 (47.6) | 5.061 | 0.080 | |
| No | 122 (39.0) | 157 (40.5) | 44 (52.4) | |||
| Dehydration | ||||||
| Yes | 2 (0.6) | 20 (5.2) | 5 (6.0) | 12.475 |
| |
| No | 311 (99.4) | 368 (94.8) | 79 (94.0) | |||
| Abdominal pain | ||||||
| Yes | 7 (2.2) | 22 (5.7) |
| 9.395 |
| |
| No | 306 (97.8) | 366 (94.3) | 76 (90.5) | |||
| Total | 313 | 388 | 84 | |||
Note: The bold values indicates p < 0.05.
χ 2 test, p < 0.05 by Bonferroni method multiple comparison test with group, GII.3 versus GII.4.
χ 2 test, p < 0.05 by Bonferroni method multiple comparison test with group, GII.3 versus GII.4.
χ 2 test, p < .0.05 by Bonferroni method multiple comparison test with group, GII.3 versus GII.4, and GII.3 versus GII.other.
χ 2 test, p < 0.05 by Bonferroni method multiple comparison test with group, GII.3 vs GII.Others.
Figure 2Phylogenetic analysis of partial nucleotide sequence of capsid gene of NoV strains detected in children with AGE in Tianjin, 2017–2019. The NoV strains detected in this study are indicated by black dots. The trees were constructed in MEGA 6.0 through the neighbor‐joining method using the Kimura 2‐parameter model. The bootstrap values (1000 replicates) are indicated in the phylogenetic tree. AGE, acute gastroenteritis; NoV, norovirus