Literature DB >> 31483239

Updated classification of norovirus genogroups and genotypes.

Preeti Chhabra1, Miranda de Graaf2, Gabriel I Parra3, Martin Chi-Wai Chan4, Kim Green5, Vito Martella6, Qiuhong Wang7, Peter A White8, Kazuhiko Katayama9, Harry Vennema10, Marion P G Koopmans2, Jan Vinjé1.   

Abstract

Noroviruses are genetically diverse RNA viruses associated with acute gastroenteritis in mammalian hosts. Phylogenetically, they can be segregated into different genogroups as well as P (polymerase)-groups and further into genotypes and P-types based on amino acid diversity of the complete VP1 gene and nucleotide diversity of the RNA-dependent RNA polymerase (RdRp) region of ORF1, respectively. In recent years, several new noroviruses have been reported that warrant an update of the existing classification scheme. Using previously described 2× standard deviation (sd) criteria to group sequences into separate clusters, we expanded the number of genogroups to 10 (GI-GX) and the number of genotypes to 49 (9 GI, 27 GII, 3 GIII, 2 GIV, 2 GV, 2 GVI and 1 genotype each for GVII, GVIII, GIX [formerly GII.15] and GX). Viruses for which currently only one sequence is available in public databases were classified into tentative new genogroups (GNA1 and GNA2) and genotypes (GII.NA1, GII.NA2 and GIV.NA1) with their definitive assignment awaiting additional related sequences. Based on nucleotide diversity in the RdRp region, noroviruses can be divided into 60 P-types (14 GI, 37 GII, 2 GIII, 1 GIV, 2 GV, 2 GVI, 1 GVII and 1 GX), 2 tentative P-groups and 14 tentative P-types. Future classification and nomenclature updates will be based on complete genome sequences and will be coordinated and disseminated by the international norovirus classification-working group.

Entities:  

Keywords:  2xSD criteria; Norovirus; P-group; P-type; acute gastroenteritis; classification; genogroup; genotype

Mesh:

Year:  2019        PMID: 31483239      PMCID: PMC7011714          DOI: 10.1099/jgv.0.001318

Source DB:  PubMed          Journal:  J Gen Virol        ISSN: 0022-1317            Impact factor:   3.891


  167 in total

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2.  Homotypic and heterotypic protection and risk of re-infection following natural norovirus infection in a highly endemic setting.

Authors:  Preeti Chhabra; Saba Rouhani; Hannah Browne; Pablo Peñataro Yori; Mery Siguas Salas; Maribel Paredes Olortegui; Lawrence H Moulton; Margaret N Kosek; Jan Vinjé
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4.  Human norovirus exhibits strain-specific sensitivity to host interferon pathways in human intestinal enteroids.

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-09       Impact factor: 11.205

5.  High-Resolution Mapping of Human Norovirus Antigens via Genomic Phage Display Library Selections and Deep Sequencing.

Authors:  Wanzhi Huang; Victoria Soeung; David M Boragine; Liya Hu; B V Venkataram Prasad; Mary K Estes; Robert L Atmar; Timothy Palzkill
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6.  Human Noroviruses Attach to Intestinal Tissues of a Broad Range of Animal Species.

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7.  Population-Level Human Secretor Status Is Associated With Genogroup 2 Type 4 Norovirus Predominance.

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8.  Bile acids and ceramide overcome the entry restriction for GII.3 human norovirus replication in human intestinal enteroids.

Authors:  Kosuke Murakami; Victoria R Tenge; Umesh C Karandikar; Shih-Ching Lin; Sasirekha Ramani; Khalil Ettayebi; Sue E Crawford; Xi-Lei Zeng; Frederick H Neill; B Vijayalakshmi Ayyar; Kazuhiko Katayama; David Y Graham; Erhard Bieberich; Robert L Atmar; Mary K Estes
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10.  Development of a Specific Anti-capsid Antibody- and Magnetic Bead-Based Immunoassay to Detect Human Norovirus Particles in Stool Samples and Spiked Mussels via Flow Cytometry.

Authors:  Ravo M Razafimahefa; Louisa F Ludwig-Begall; Mamadou Amadou Diallo; Benjamin G Dewals; Alain Vanderplasschen; Olivier Nivelles; Caroline Deketelaere; Axel Mauroy; Etienne Thiry
Journal:  Food Environ Virol       Date:  2021-08-07       Impact factor: 2.778

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