Literature DB >> 34516793

A P(V) platform for oligonucleotide synthesis.

Yazhong Huang1,2, Kyle W Knouse3,2, Shenjie Qiu2,4, Wei Hao3, Natalia M Padial3, Julien C Vantourout3, Bin Zheng2,4, Stephen E Mercer1,2, Javier Lopez-Ogalla3, Rohan Narayan3, Richard E Olson1,2, Donna G Blackmond3, Martin D Eastgate2,4, Michael A Schmidt2,4, Ivar M McDonald1,2,4, Phil S Baran3.   

Abstract

The promise of gene-based therapies is being realized at an accelerated pace, with more than 155 active clinical trials and multiple U.S. Food and Drug Administration approvals for therapeutic oligonucleotides, by far most of which contain modified phosphate linkages. These unnatural linkages have desirable biological and physical properties but are often accessed with difficulty using phosphoramidite chemistry. We report a flexible and efficient [P(V)]–based platform that can install a wide variety of phosphate linkages at will into oligonucleotides. This approach uses readily accessible reagents and can install not only stereodefined or racemic thiophosphates but any combination of (S, R or rac)–PS with native phosphodiester (PO2) and phosphorodithioate (PS2) linkages into DNA and other modified nucleotide polymers. This platform easily accesses this diversity under a standardized coupling protocol with sustainably prepared, stable P(V) reagents.

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Year:  2021        PMID: 34516793      PMCID: PMC8579956          DOI: 10.1126/science.abi9727

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   63.714


  25 in total

1.  Synthesis of PS/PO-chimeric oligonucleotides using mixed oxathiaphospholane and phosphoramidite chemistry.

Authors:  Ewa Radzikowska; Janina Baraniak
Journal:  Org Biomol Chem       Date:  2015-01-07       Impact factor: 3.876

2.  Novel route to oligo(deoxyribonucleoside phosphorothioates). Stereocontrolled synthesis of P-chiral oligo(deoxyribonucleoside phosphorothioates).

Authors:  W J Stec; A Grajkowski; M Koziolkiewicz; B Uznanski
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

Review 3.  Synthesis of phosphorothioate oligonucleotides with stereodefined phosphorothioate linkages.

Authors:  Piotr Guga; Wojciech J Stec
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2003-10

4.  Synthesis of oligonucleotides by use of phosphoric triesters.

Authors:  F Eckstein; I Rizk
Journal:  Angew Chem Int Ed Engl       Date:  1967-08       Impact factor: 15.336

5.  Control of phosphorothioate stereochemistry substantially increases the efficacy of antisense oligonucleotides.

Authors:  Naoki Iwamoto; David C D Butler; Nenad Svrzikapa; Susovan Mohapatra; Ivan Zlatev; Dinah W Y Sah; Stephany M Standley; Genliang Lu; Luciano H Apponi; Maria Frank-Kamenetsky; Jason Jingxin Zhang; Chandra Vargeese; Gregory L Verdine
Journal:  Nat Biotechnol       Date:  2017-08-21       Impact factor: 54.908

Review 6.  Phosphorodithioate DNA as a potential therapeutic drug.

Authors:  W S Marshall; M H Caruthers
Journal:  Science       Date:  1993-03-12       Impact factor: 47.728

7.  The chemical synthesis of DNA/RNA: our gift to science.

Authors:  Marvin H Caruthers
Journal:  J Biol Chem       Date:  2012-12-06       Impact factor: 5.157

8.  Analysis of oligo(deoxynucleoside phosphorothioate)s and their diastereomeric composition.

Authors:  A Wilk; W J Stec
Journal:  Nucleic Acids Res       Date:  1995-02-11       Impact factor: 16.971

9.  Sustainability Challenges and Opportunities in Oligonucleotide Manufacturing.

Authors:  Benjamin I Andrews; Firoz D Antia; Shawn B Brueggemeier; Louis J Diorazio; Stefan G Koenig; Michael E Kopach; Heewon Lee; Martin Olbrich; Anna L Watson
Journal:  J Org Chem       Date:  2020-11-30       Impact factor: 4.354

10.  Stereochemical bias introduced during RNA synthesis modulates the activity of phosphorothioate siRNAs.

Authors:  Hartmut Jahns; Martina Roos; Jochen Imig; Fabienne Baumann; Yuluan Wang; Ryan Gilmour; Jonathan Hall
Journal:  Nat Commun       Date:  2015-03-06       Impact factor: 14.919

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  2 in total

Review 1.  Beyond Triphosphates: Reagents and Methods for Chemical Oligophosphorylation.

Authors:  Scott M Shepard; Henning J Jessen; Christopher C Cummins
Journal:  J Am Chem Soc       Date:  2022-04-26       Impact factor: 16.383

2.  Synthesis of phosphatidic acids via cobalt(salen) catalyzed epoxide ring-opening with dibenzyl phosphate.

Authors:  Ruben L H Andringa; Marijn Jonker; Adriaan J Minnaard
Journal:  Org Biomol Chem       Date:  2022-03-16       Impact factor: 3.876

  2 in total

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