Literature DB >> 34509299

Deciphering pathogenicity of variants of uncertain significance with CRISPR-edited iPSCs.

Hongchao Guo1, Lichao Liu1, Masataka Nishiga1, Le Cong2, Joseph C Wu3.   

Abstract

Genetic variants play an important role in conferring risk for cardiovascular diseases (CVDs). With the rapid development of next-generation sequencing (NGS), thousands of genetic variants associated with CVDs have been identified by genome-wide association studies (GWAS), but the function of more than 40% of genetic variants is still unknown. This gap of knowledge is a barrier to the clinical application of the genetic information. However, determining the pathogenicity of a variant of uncertain significance (VUS) is challenging due to the lack of suitable model systems and accessible technologies. By combining clustered regularly interspaced short palindromic repeats (CRISPR) and human induced pluripotent stem cells (iPSCs), unprecedented advances are now possible in determining the pathogenicity of VUS in CVDs. Here, we summarize recent progress and new strategies in deciphering pathogenic variants for CVDs using CRISPR-edited human iPSCs.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CRISPR; cardiovascular disease; induced pluripotent stem cells; variants of uncertain significance

Mesh:

Year:  2021        PMID: 34509299      PMCID: PMC8578372          DOI: 10.1016/j.tig.2021.08.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  123 in total

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Journal:  Mol Ther       Date:  2016-01-14       Impact factor: 11.454

Review 2.  Genome-Editing Technologies: Principles and Applications.

Authors:  Thomas Gaj; Shannon J Sirk; Sai-Lan Shui; Jia Liu
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-12-01       Impact factor: 10.005

3.  A Premature Termination Codon Mutation in MYBPC3 Causes Hypertrophic Cardiomyopathy via Chronic Activation of Nonsense-Mediated Decay.

Authors:  Timon Seeger; Rajani Shrestha; Chi Keung Lam; Caressa Chen; Wesley L McKeithan; Edward Lau; Alexa Wnorowski; George McMullen; Matthew Greenhaw; Jaecheol Lee; Angelos Oikonomopoulos; Soah Lee; Huaxiao Yang; Mark Mercola; Matthew Wheeler; Euan A Ashley; Fan Yang; Ioannis Karakikes; Joseph C Wu
Journal:  Circulation       Date:  2019-02-05       Impact factor: 29.690

Review 4.  Genome Editing in Human Pluripotent Stem Cells: Approaches, Pitfalls, and Solutions.

Authors:  William T Hendriks; Curtis R Warren; Chad A Cowan
Journal:  Cell Stem Cell       Date:  2016-01-07       Impact factor: 24.633

5.  Efficient introduction of specific homozygous and heterozygous mutations using CRISPR/Cas9.

Authors:  Dominik Paquet; Dylan Kwart; Antonia Chen; Andrew Sproul; Samson Jacob; Shaun Teo; Kimberly Moore Olsen; Andrew Gregg; Scott Noggle; Marc Tessier-Lavigne
Journal:  Nature       Date:  2016-04-27       Impact factor: 49.962

6.  Blood pressure variability and multiple organ damage in primary hypertension.

Authors:  G Leoncini; F Viazzi; G Storace; G Deferrari; R Pontremoli
Journal:  J Hum Hypertens       Date:  2013-06-06       Impact factor: 3.012

7.  A hypertension patient-derived iPSC model demonstrates a role for G protein-coupled estrogen receptor in hypertension risk and development.

Authors:  Natalie C Fredette; Eliyah Malik; Marah L Mukhtar; Eric R Prossnitz; Naohiro Terada
Journal:  Am J Physiol Cell Physiol       Date:  2020-08-12       Impact factor: 4.249

8.  Combinatorial interactions of genetic variants in human cardiomyopathy.

Authors:  Dekker C Deacon; Cassandra L Happe; Chao Chen; Neil Tedeschi; Ana Maria Manso; Ting Li; Nancy D Dalton; Qian Peng; Elie N Farah; Yusu Gu; Kevin P Tenerelli; Vivien D Tran; Ju Chen; Kirk L Peterson; Nicholas J Schork; Eric D Adler; Adam J Engler; Robert S Ross; Neil C Chi
Journal:  Nat Biomed Eng       Date:  2019-02-07       Impact factor: 25.671

9.  iPSC-derived cardiomyocytes reveal abnormal TGF-β signalling in left ventricular non-compaction cardiomyopathy.

Authors:  Kazuki Kodo; Sang-Ging Ong; Fereshteh Jahanbani; Vittavat Termglinchan; Keiichi Hirono; Kolsoum InanlooRahatloo; Antje D Ebert; Praveen Shukla; Oscar J Abilez; Jared M Churko; Ioannis Karakikes; Gwanghyun Jung; Fukiko Ichida; Sean M Wu; Michael P Snyder; Daniel Bernstein; Joseph C Wu
Journal:  Nat Cell Biol       Date:  2016-09-19       Impact factor: 28.824

10.  Polygenic Hyperlipidemias and Coronary Artery Disease Risk.

Authors:  Marja-Riitta Taskinen; Samuli Ripatti; Pietari Ripatti; Joel T Rämö; Nina J Mars; Yu Fu; Jake Lin; Sanni Söderlund; Christian Benner; Ida Surakka; Tuomo Kiiskinen; Aki S Havulinna; Priit Palta; Nelson B Freimer; Elisabeth Widén; Veikko Salomaa; Taru Tukiainen; Matti Pirinen; Aarno Palotie
Journal:  Circ Genom Precis Med       Date:  2020-03-10
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  2 in total

Review 1.  Deciphering Common Long QT Syndrome Using CRISPR/Cas9 in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes.

Authors:  Yongfei Song; Zequn Zheng; Jiangfang Lian
Journal:  Front Cardiovasc Med       Date:  2022-05-13

2.  Towards key scientific questions in the diagnosis and treatment of rare diseases: Summary from the 297th Meeting of the Shuangqing Forum.

Authors:  Cai-Yun Zhu; Wei Hong; Lei Wang; Li-Jun Ding; Xue Zhang
Journal:  Zool Res       Date:  2022-03-18
  2 in total

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