Literature DB >> 34508893

The Human Connectome Project: A retrospective.

Jennifer Stine Elam1, Matthew F Glasser1, Michael P Harms1, Stamatios N Sotiropoulos2, Jesper L R Andersson3, Gregory C Burgess1, Sandra W Curtiss1, Robert Oostenveld4, Linda J Larson-Prior5, Jan-Mathijs Schoffelen4, Michael R Hodge1, Eileen A Cler1, Daniel M Marcus1, Deanna M Barch1, Essa Yacoub6, Stephen M Smith3, Kamil Ugurbil6, David C Van Essen7.   

Abstract

The Human Connectome Project (HCP) was launched in 2010 as an ambitious effort to accelerate advances in human neuroimaging, particularly for measures of brain connectivity; apply these advances to study a large number of healthy young adults; and freely share the data and tools with the scientific community. NIH awarded grants to two consortia; this retrospective focuses on the "WU-Minn-Ox" HCP consortium centered at Washington University, the University of Minnesota, and University of Oxford. In just over 6 years, the WU-Minn-Ox consortium succeeded in its core objectives by: 1) improving MR scanner hardware, pulse sequence design, and image reconstruction methods, 2) acquiring and analyzing multimodal MRI and MEG data of unprecedented quality together with behavioral measures from more than 1100 HCP participants, and 3) freely sharing the data (via the ConnectomeDB database) and associated analysis and visualization tools. To date, more than 27 Petabytes of data have been shared, and 1538 papers acknowledging HCP data use have been published. The "HCP-style" neuroimaging paradigm has emerged as a set of best-practice strategies for optimizing data acquisition and analysis. This article reviews the history of the HCP, including comments on key events and decisions associated with major project components. We discuss several scientific advances using HCP data, including improved cortical parcellations, analyses of connectivity based on functional and diffusion MRI, and analyses of brain-behavior relationships. We also touch upon our efforts to develop and share a variety of associated data processing and analysis tools along with detailed documentation, tutorials, and an educational course to train the next generation of neuroimagers. We conclude with a look forward at opportunities and challenges facing the human neuroimaging field from the perspective of the HCP consortium.
Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Behavior; Connectivity; Diffusion imaging; Functional MRI; Magnetoencephalography; Parcellation; informatics

Mesh:

Year:  2021        PMID: 34508893      PMCID: PMC9387634          DOI: 10.1016/j.neuroimage.2021.118543

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   7.400


  195 in total

1.  Parcellations and hemispheric asymmetries of human cerebral cortex analyzed on surface-based atlases.

Authors:  David C Van Essen; Matthew F Glasser; Donna L Dierker; John Harwell; Timothy Coalson
Journal:  Cereb Cortex       Date:  2011-11-02       Impact factor: 5.357

2.  Superficial white matter fiber systems impede detection of long-range cortical connections in diffusion MR tractography.

Authors:  Colin Reveley; Anil K Seth; Carlo Pierpaoli; Afonso C Silva; David Yu; Richard C Saunders; David A Leopold; Frank Q Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

3.  "Squashing peanuts and smashing pumpkins": how noise distorts diffusion-weighted MR data.

Authors:  Derek K Jones; Peter J Basser
Journal:  Magn Reson Med       Date:  2004-11       Impact factor: 4.668

4.  High-resolution whole-brain diffusion MRI at 7T using radiofrequency parallel transmission.

Authors:  Xiaoping Wu; Edward J Auerbach; An T Vu; Steen Moeller; Christophe Lenglet; Sebastian Schmitter; Pierre-François Van de Moortele; Essa Yacoub; Kâmil Uğurbil
Journal:  Magn Reson Med       Date:  2018-03-30       Impact factor: 4.668

5.  The Lifespan Human Connectome Project in Aging: An overview.

Authors:  Susan Y Bookheimer; David H Salat; Melissa Terpstra; Beau M Ances; Deanna M Barch; Randy L Buckner; Gregory C Burgess; Sandra W Curtiss; Mirella Diaz-Santos; Jennifer Stine Elam; Bruce Fischl; Douglas N Greve; Hannah A Hagy; Michael P Harms; Olivia M Hatch; Trey Hedden; Cynthia Hodge; Kevin C Japardi; Taylor P Kuhn; Timothy K Ly; Stephen M Smith; Leah H Somerville; Kâmil Uğurbil; Andre van der Kouwe; David Van Essen; Roger P Woods; Essa Yacoub
Journal:  Neuroimage       Date:  2018-10-15       Impact factor: 6.556

6.  Resting brain dynamics at different timescales capture distinct aspects of human behavior.

Authors:  Raphaël Liégeois; Jingwei Li; Ru Kong; Csaba Orban; Dimitri Van De Ville; Tian Ge; Mert R Sabuncu; B T Thomas Yeo
Journal:  Nat Commun       Date:  2019-05-24       Impact factor: 14.919

7.  The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data.

Authors:  Elise Bannier; Gareth Barker; Valentina Borghesani; Nils Broeckx; Patricia Clement; Kyrre E Emblem; Satrajit Ghosh; Enrico Glerean; Krzysztof J Gorgolewski; Marko Havu; Yaroslav O Halchenko; Peer Herholz; Anne Hespel; Stephan Heunis; Yue Hu; Chuan-Peng Hu; Dorien Huijser; María de la Iglesia Vayá; Radim Jancalek; Vasileios K Katsaros; Marie-Luise Kieseler; Camille Maumet; Clara A Moreau; Henk-Jan Mutsaerts; Robert Oostenveld; Esin Ozturk-Isik; Nicolas Pascual Leone Espinosa; John Pellman; Cyril R Pernet; Francesca Benedetta Pizzini; Amira Šerifović Trbalić; Paule-Joanne Toussaint; Matteo Visconti di Oleggio Castello; Fengjuan Wang; Cheng Wang; Hua Zhu
Journal:  Hum Brain Mapp       Date:  2021-02-01       Impact factor: 5.038

8.  Minimal specifications for non-human primate MRI: Challenges in standardizing and harmonizing data collection.

Authors:  Joonas A Autio; Qi Zhu; Xiaolian Li; Matthew F Glasser; Caspar M Schwiedrzik; Damien A Fair; Jan Zimmermann; Essa Yacoub; Ravi S Menon; David C Van Essen; Takuya Hayashi; Brian Russ; Wim Vanduffel
Journal:  Neuroimage       Date:  2021-04-18       Impact factor: 6.556

Review 9.  The conception of the ABCD study: From substance use to a broad NIH collaboration.

Authors:  Nora D Volkow; George F Koob; Robert T Croyle; Diana W Bianchi; Joshua A Gordon; Walter J Koroshetz; Eliseo J Pérez-Stable; William T Riley; Michele H Bloch; Kevin Conway; Bethany G Deeds; Gayathri J Dowling; Steven Grant; Katia D Howlett; John A Matochik; Glen D Morgan; Margaret M Murray; Antonio Noronha; Catherine Y Spong; Eric M Wargo; Kenneth R Warren; Susan R B Weiss
Journal:  Dev Cogn Neurosci       Date:  2017-10-10       Impact factor: 6.464

10.  Optimising network modelling methods for fMRI.

Authors:  Usama Pervaiz; Diego Vidaurre; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2020-02-13       Impact factor: 6.556

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  9 in total

1.  Graded Variation in T1w/T2w Ratio during Adolescence: Measurement, Caveats, and Implications for Development of Cortical Myelin.

Authors:  Graham L Baum; John C Flournoy; Matthew F Glasser; Michael P Harms; Patrick Mair; Ashley F P Sanders; Deanna M Barch; Randy L Buckner; Susan Bookheimer; Mirella Dapretto; Stephen Smith; Kathleen M Thomas; Essa Yacoub; David C Van Essen; Leah H Somerville
Journal:  J Neurosci       Date:  2022-06-15       Impact factor: 6.709

Review 2.  Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact.

Authors:  Qiuyun Fan; Cornelius Eichner; Maryam Afzali; Lars Mueller; Chantal M W Tax; Mathias Davids; Mirsad Mahmutovic; Boris Keil; Berkin Bilgic; Kawin Setsompop; Hong-Hsi Lee; Qiyuan Tian; Chiara Maffei; Gabriel Ramos-Llordén; Aapo Nummenmaa; Thomas Witzel; Anastasia Yendiki; Yi-Qiao Song; Chu-Chung Huang; Ching-Po Lin; Nikolaus Weiskopf; Alfred Anwander; Derek K Jones; Bruce R Rosen; Lawrence L Wald; Susie Y Huang
Journal:  Neuroimage       Date:  2022-02-23       Impact factor: 7.400

3.  Untapped Neuroimaging Tools for Neuro-Oncology: Connectomics and Spatial Transcriptomics.

Authors:  Jurgen Germann; Gelareh Zadeh; Alireza Mansouri; Walter Kucharczyk; Andres M Lozano; Alexandre Boutet
Journal:  Cancers (Basel)       Date:  2022-01-18       Impact factor: 6.639

4.  The highways and byways of the brain.

Authors:  Claus C Hilgetag; Basilis Zikopoulos
Journal:  PLoS Biol       Date:  2022-03-31       Impact factor: 8.029

5.  Empirical transmit field bias correction of T1w/T2w myelin maps.

Authors:  Matthew F Glasser; Timothy S Coalson; Michael P Harms; Junqian Xu; Graham L Baum; Joonas A Autio; Edward J Auerbach; Douglas N Greve; Essa Yacoub; David C Van Essen; Nicholas A Bock; Takuya Hayashi
Journal:  Neuroimage       Date:  2022-06-10       Impact factor: 7.400

Review 6.  From descriptive connectome to mechanistic connectome: Generative modeling in functional magnetic resonance imaging analysis.

Authors:  Guoshi Li; Pew-Thian Yap
Journal:  Front Hum Neurosci       Date:  2022-08-17       Impact factor: 3.473

7.  Constructive connectomics: How neuronal axons get from here to there using gene-expression maps derived from their family trees.

Authors:  Stan Kerstjens; Gabriela Michel; Rodney J Douglas
Journal:  PLoS Comput Biol       Date:  2022-08-25       Impact factor: 4.779

Review 8.  Functional Connectivity Methods and Their Applications in fMRI Data.

Authors:  Yasaman Shahhosseini; Michelle F Miranda
Journal:  Entropy (Basel)       Date:  2022-03-11       Impact factor: 2.524

9.  Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.

Authors:  Jean-Baptiste Poline; David N Kennedy; Friedrich T Sommer; Giorgio A Ascoli; David C Van Essen; Adam R Ferguson; Jeffrey S Grethe; Michael J Hawrylycz; Paul M Thompson; Russell A Poldrack; Satrajit S Ghosh; David B Keator; Thomas L Athey; Joshua T Vogelstein; Helen S Mayberg; Maryann E Martone
Journal:  Neuroinformatics       Date:  2022-01-21
  9 in total

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