Literature DB >> 33882349

Minimal specifications for non-human primate MRI: Challenges in standardizing and harmonizing data collection.

Joonas A Autio1, Qi Zhu2, Xiaolian Li3, Matthew F Glasser4, Caspar M Schwiedrzik5, Damien A Fair6, Jan Zimmermann6, Essa Yacoub6, Ravi S Menon7, David C Van Essen8, Takuya Hayashi9, Brian Russ10, Wim Vanduffel11.   

Abstract

Recent methodological advances in MRI have enabled substantial growth in neuroimaging studies of non-human primates (NHPs), while open data-sharing through the PRIME-DE initiative has increased the availability of NHP MRI data and the need for robust multi-subject multi-center analyses. Streamlined acquisition and analysis protocols would accelerate and improve these efforts. However, consensus on minimal standards for data acquisition protocols and analysis pipelines for NHP imaging remains to be established, particularly for multi-center studies. Here, we draw parallels between NHP and human neuroimaging and provide minimal guidelines for harmonizing and standardizing data acquisition. We advocate robust translation of widely used open-access toolkits that are well established for analyzing human data. We also encourage the use of validated, automated pre-processing tools for analyzing NHP data sets. These guidelines aim to refine methodological and analytical strategies for small and large-scale NHP neuroimaging data. This will improve reproducibility of results, and accelerate the convergence between NHP and human neuroimaging strategies which will ultimately benefit fundamental and translational brain science.
Copyright © 2021. Published by Elsevier Inc.

Entities:  

Keywords:  MRI; Multi-site; Non-human primate; PRIME-DE; Standardization

Year:  2021        PMID: 33882349     DOI: 10.1016/j.neuroimage.2021.118082

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  6 in total

Review 1.  Comparative connectomics of the primate social brain.

Authors:  Chihiro Yokoyama; Joonas A Autio; Takuro Ikeda; Jérôme Sallet; Rogier B Mars; David C Van Essen; Matthew F Glasser; Norihiro Sadato; Takuya Hayashi
Journal:  Neuroimage       Date:  2021-10-31       Impact factor: 7.400

Review 2.  The Human Connectome Project: A retrospective.

Authors:  Jennifer Stine Elam; Matthew F Glasser; Michael P Harms; Stamatios N Sotiropoulos; Jesper L R Andersson; Gregory C Burgess; Sandra W Curtiss; Robert Oostenveld; Linda J Larson-Prior; Jan-Mathijs Schoffelen; Michael R Hodge; Eileen A Cler; Daniel M Marcus; Deanna M Barch; Essa Yacoub; Stephen M Smith; Kamil Ugurbil; David C Van Essen
Journal:  Neuroimage       Date:  2021-09-08       Impact factor: 7.400

Review 3.  The nonhuman primate neuroimaging and neuroanatomy project.

Authors:  Takuya Hayashi; Yujie Hou; Matthew F Glasser; Joonas A Autio; Kenneth Knoblauch; Miho Inoue-Murayama; Tim Coalson; Essa Yacoub; Stephen Smith; Henry Kennedy; David C Van Essen
Journal:  Neuroimage       Date:  2021-01-20       Impact factor: 6.556

4.  Intrinsic timescales as an organizational principle of neural processing across the whole rhesus macaque brain.

Authors:  Ana M G Manea; Anna Zilverstand; Kamil Ugurbil; Sarah R Heilbronner; Jan Zimmermann
Journal:  Elife       Date:  2022-03-02       Impact factor: 8.140

5.  An evolutionary gap in primate default mode network organization.

Authors:  Clément M Garin; Yuki Hori; Stefan Everling; Christopher T Whitlow; Finnegan J Calabro; Beatriz Luna; Mathilda Froesel; Maëva Gacoin; Suliann Ben Hamed; Marc Dhenain; Christos Constantinidis
Journal:  Cell Rep       Date:  2022-04-12       Impact factor: 9.995

6.  Brain-wide functional connectivity of face patch neurons during rest.

Authors:  Daniel Zaldivar; Kenji W Koyano; Frank Q Ye; David C Godlove; Soo Hyun Park; Brian E Russ; Rebecca Bhik-Ghanie; David A Leopold
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-31       Impact factor: 12.779

  6 in total

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