| Literature DB >> 34490245 |
Svetlana Ukraintseva1, Matt Duan1, Konstantin Arbeev1, Deqing Wu1, Olivia Bagley1, Arseniy P Yashkin1, Galina Gorbunova1, Igor Akushevich1, Alexander Kulminski1, Anatoliy Yashin1.
Abstract
A major goal of aging research is identifying genetic targets that could be used to slow or reverse aging - changes in the body and extend limits of human lifespan. However, majority of genes that showed the anti-aging and pro-survival effects in animal models were not replicated in humans, with few exceptions. Potential reasons for this lack of translation include a highly conditional character of genetic influence on lifespan, and its heterogeneity, meaning that better survival may be result of not only activity of individual genes, but also gene-environment and gene-gene interactions, among other factors. In this paper, we explored associations of genetic interactions with human lifespan. We selected candidate genes from well-known aging pathways (IGF1/FOXO growth signaling, P53/P16 apoptosis/senescence, and mTOR/SK6 autophagy and survival) that jointly decide on outcomes of cell responses to stress and damage, and so could be prone to interactions. We estimated associations of pairwise statistical epistasis between SNPs in these genes with survival to age 85+ in the Atherosclerosis Risk in Communities study, and found significant (FDR < 0.05) effects of interactions between SNPs in IGF1R, TGFBR2, and BCL2 on survival 85+. We validated these findings in the Cardiovascular Health Study sample, with P < 0.05, using survival to age 85+, and to the 90th percentile, as outcomes. Our results show that interactions between SNPs in genes from the aging pathways influence survival more significantly than individual SNPs in the same genes, which may contribute to heterogeneity of lifespan, and to lack of animal to human translation in aging research.Entities:
Keywords: aging genes; aging pathways; animal to human translation; genetic interactions; heterogeneity of longevity; human lifespan; statistical epistasis; stress response
Year: 2021 PMID: 34490245 PMCID: PMC8417405 DOI: 10.3389/fcell.2021.692020
Source DB: PubMed Journal: Front Cell Dev Biol ISSN: 2296-634X
FIGURE 1Common sources of heterogeneity of aging and longevity related traits, and approaches to their study.
FIGURE 2The interplay among “aging” pathways that have been a major focus of aging research over the last decades: IGF1/AKT/FOXO3 growth signaling, TP53/P21/P16 apoptosis and senescence, and mTOR/S6K autophagy and survival pathways. This Figure illustrates the complexity of the interactions between these pathways regulating cell responses to stress and damage, which may in turn impact tissue resilience, and, ultimately, influence organismal survival and lifespan. This Figure was prepared using MetaCore Pathway Map Creator (PMC) tool (Dubovenko et al., 2017) from Clarivate Analytics. The PMC allows to connect gene products selected by the user in a picture showing the molecular interactions occurring between members of respective cellular processes and pathways. The latter are defined, annotated, and manually curated by Clarivate Analytics scientists based on the up-to-date literature and pathway libraries. Main protein classes shown on Figure 2 are annotated in Supplementary Table 3.
Study sample, candidate genes, and outcome phenotypes.
|
|
|
|
|
|
|
|
| |||||
| CHS | 2,201 | 2,955 | 15.2 | 84.1 | 1,053 |
| ARIC | 5,962 | 7,350 | 26 | 74 | 863 (overlapped with SNPs in ARIC) |
|
| |||||
| IGF1/AKT/FOXO3 growth signaling: | |||||
| TP53/P21/P16 apoptosis/senescence: | |||||
| mTOR/S6K mediated autophagy/survival: | |||||
| Genes broadly involved in the cross-talk between the aging pathways: | |||||
|
| |||||
|
| |||||
| Survived to age 85+ (1) vs. died before age 85 (0) | |||||
| Survived to *age corresponding to 10% of the longest lived (1) vs. died before that age (0) | |||||
Results of associations of interactions between SNPs in selected candidate genes from aging pathways (Table 1B) with survival to age 85+ in ARIC and CHS CARe.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| ARIC | 3 | rs3773663 | A(0.42) | 0.14 | TGFBR2 | 15 | rs939626 | G(0.47) | 0.07 | IGF1R | W | F | 0.26 | *2.1E−06 | 1,430 |
| CHS | 3 | rs3773663 | A(0.41) | 0.09 | TGFBR2 | 15 | rs939626 | G(0.45) | 0.12 | IGF1R | W | F | 0.75 | 0.03 | 1,519 |
| ARIC | 15 | rs11247378 | T(0.13) | 0.96 | IGF1R | 18 | rs956572 | A(0.25) | 0.73 | BCL2 | B | F | 0.10 | *3.9E−07 | 810 |
| ARIC | 15 | rs11247380 | A(0.28) | 0.37 | IGF1R | 18 | rs956572 | A(0.25) | 0.73 | BCL2 | B | F | 0.35 | 5.5E−04 | 811 |
| CHS | 15 | rs11247380 | A(0.27) | 0.32 | IGF1R | 18 | rs956572 | A(0.25) | 0.20 | BCL2 | B | F | 0.33 | 0.007 | 276 |