| Literature DB >> 34469562 |
Md Hasanuzzaman1,2, Senjuti Saha1, Roly Malaker1, Hafizur Rahman1, Mohammad S I Sajib1, Rajib C Das1, Maksuda Islam1, Davidson H Hamer3,4,5, Gary L Darmstadt6, Samir K Saha1,7,8.
Abstract
BACKGROUND: Sensitivity of culture for the detection of Streptococcus pneumoniae is limited by prior antibiotic exposure. Immunochromatographic test (ICT) is highly sensitive and specific for pneumococcal antigen detection in the cerebrospinal fluid (CSF) of meningitis cases. We determined the specificity and sensitivity of culture, ICT, and polymerase chain reaction (PCR) and the effect of antibiotic exposure on their performance.Entities:
Keywords: ICT; antibiotic exposure; diagnostic; meningitis; pneumococcal vaccine; pneumococcus; surveillance; vaccine preventable
Mesh:
Substances:
Year: 2021 PMID: 34469562 PMCID: PMC8409532 DOI: 10.1093/infdis/jiab073
Source DB: PubMed Journal: J Infect Dis ISSN: 0022-1899 Impact factor: 5.226
Figure 1.Selection, characteristics, and pathogens detected in the cerebrospinal fluid samples used in the study. A, Flow diagram of the diagnostic tests used in the study and results attained. B, The total number of pneumococcus detected using each method. *These positives also include the 9 samples detected by culture. #The total of 1558 and 203 samples (1761) included in specificity and sensitivity calculations. Abbreviations: CSF, cerebrospinal fluid; Hi, Haemophilus influenzae; ICT, immunochromatographic test; Nmen, Neisseria meningitidis; QNS, quantity not sufficient; qPCR, quantitative polymerase chain reaction; Spn, Streptococcus pneumoniae.
Pathogens Detected in the 1883 Cerebrospinal Fluid Specimens Tested in The Study and the Method of Detection
| Pathogen Detected | No. Culture Positive | No. Antigen/qPCR Positive, Culture Negative | Total |
|---|---|---|---|
|
| 9 | 198 | 207 |
|
| 3 | 36 | 39 |
|
| 0 | 9 | 9 |
| 6 | NA | 6 | |
| 7 | NA | 5 | |
|
| 3 | NA | 3 |
| 2 | NA | 2 | |
| 1 | NA | 1 | |
|
| 1 | NA | 1 |
| Total | 32 | 243 | 275 |
Abbreviations: NA, not applicable (antigen/qPCR tests were done for only S. pneumoniae, N. meningitidis, and H. influenzae); qPCR, quantitative polymerase chain reaction.
Sensitivity and Specificity of Bacterial Culture, ICT, and qPCR in the Detection of Pneumococcus
| Test Assay | Comparator | Sensitivity, % (95% CI) | Specificity, % (95% CI) |
|---|---|---|---|
| Culture | ICT | 4.43 (2.05–8.25) | 100 (99.76–100) |
| qPCR | ICT | 90.64 (85.77–94.27) | 100 (99.76–100) |
| ICT | Culture | 100 (66.4–100) | 100 (99.8–100) |
| qPCR | Culture | 100 (66.4–100) | 100 (99.8–100) |
| Culture | qPCR | 4.89 (2.26–9.08) | 100 (99.77–100) |
| ICT | qPCR | 100 (98–100) | 100 (99.8–100) |
Abbreviations: CI, confidence interval; ICT, immunochromatographic test; qPCR, quantitative polymerase chain reaction.
Figure 2.Time of collection and mode of pneumococcal detection of the 165 longitudinal samples from 69 patients with confirmed pneumococcal meningitis. The exact start date of antibiotic treatment was known for patients 1–30. The start date was estimated for patients 31–69 using lytA cycle threshold value (see “Methods”). Abbreviations: cPCR, conventional polymerase chain reaction; ICT, immunochromatographic test; qPCR, quantitative polymerase chain reaction.
Figure 3.Sensitivity of culture, immunochromatographic test, cPCR, and qPCR for detection of pneumococcus after antibiotic treatment initiation. Abbreviations: cPCR, conventional polymerase chain reaction; ICT, immunochromatographic test; qPCR, quantitative polymerase chain reaction.