| Literature DB >> 34440399 |
Fidel González-Torralva1, Jason K Norsworthy1.
Abstract
Amaranthus palmeri S. Watson (Palmer amaranth) is considered a problematic and troublesome weed species in many crops in the USA, partly because of its ability to evolve resistance to herbicides. In this study, we explored the mechanism of resistance in a trifluralin-resistant A. palmeri accession collected from Arkansas, USA. Dose-response assays using agar plates demonstrated an EC50 (effective concentration that reduces root length by 50%) of 1.02 µM trifluralin compared to 0.39 µM obtained in the susceptible accession. Thus, under these conditions, the resistant accession required 2.6 times more trifluralin to inhibit root length by 50%. Seeds in the presence or absence of the cytochrome P450-inhibitior malathion displayed a differential response with no significant influence on root length, suggesting that resistance is not P450-mediated. In addition, application of 4-chloro-7-nitrobenzofurazan (NBD-Cl), a glutathione S-transferase (GST) inhibitor, showed significant differences in root length, indicating that GSTs are most likely involved in the resistance mechanism. Sequencing of α- and β-tubulin genes revealed no single nucleotide polymorphisms (SNPs) previously described between accessions. In addition, relative gene copy number of α- and β-tubulin genes were estimated; however, both resistant and susceptible accessions displayed similar gene copy numbers. Overall, our results revealed that GST-mediated metabolism contributes to trifluralin resistance in this A. palmeri accession from Arkansas.Entities:
Keywords: GST; P450; Palmer amaranth; herbicide resistance; resistance mechanism; trifluralin
Mesh:
Substances:
Year: 2021 PMID: 34440399 PMCID: PMC8394034 DOI: 10.3390/genes12081225
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Primer sets used to calculate the relative α and β-tubulin gene copy number by qPCR in trifluralin-resistant and susceptible A. palmeri accessions.
| Gene 1 | Sequence (5′ → 3′) 2 | Amplicon (bp) | Slope | Efficiency (%) 3 |
|---|---|---|---|---|
| F GAGAAGGTGGAGACGATGCAT | 123 | −3.352 | 98.8 | |
| F GCTGTCTTAGGTTCCCAGGTC | 119 | −3.421 | 96.0 | |
|
| F CGACGGAAAATAGCAACAAAGTG | 116 | −3.355 | 98.6 |
|
| F TGCTCCATTTTTGAGGGTTGC | 113 | −3.3033 | 100.8 |
1α-tubulin, α-tubulin; β-tubulin, β-tubulin; CCR, Cinnamoyl-CoA reductase; PPAN, peter Pan-like. 2 F, forward; R, reverse. 3 Efficiency was calculated as E = [10(−1/slope) − 1] × 100.
Figure 1Dose-response curves of A. palmeri seedlings treated with trifluralin herbicide. Root lengths were obtained at 10 days after treatment. Data were subjected to a four-parameter logistic curve. R: resistant accession; S: susceptible accession. Vertical bars represent ± standard deviations of the mean.
Figure 2Representative agar plates showing the response of A. palmeri seedlings under different treatments. Control (A); trifluralin 1 µM (B); trifluralin 1 µM + malathion 8 µM (C); and trifluralin 1 µM + NBD-Cl 50 nM (D). In all plates, left and right sides correspond to resistant and susceptible accession seedlings, respectively. Photographs were taken at 10 days after treatment.
Figure 3Partial protein sequence alignment of α-tubulin gene of trifluralin-susceptible (S) and resistant (R) A. palmeri accessions. Sequences were aligned to that of the A. thaliana (AT4G14960) α-tubulin gene. Highlighted color indicates homology among the different sequences.
Figure 4Partial protein sequence alignment of β-tubulin gene of trifluralin-susceptible (S) and resistant (R) A. palmeri accessions. Sequences were aligned to that of the A. thaliana (AT1G75780) β-tubulin gene. Highlighted color indicates homology among the different sequences.
Figure 5Gene copy number estimation of the α and β-tubulin genes relative to CCR and PPAN reference genes in trifluralin-resistant (R) and susceptible (S) accessions. Bars ± standard deviation of the mean (n = 4). A Student’s t-test analysis was performed to assess significant differences between accessions.