Literature DB >> 34421157

Global and Simultaneous Hypothesis Testing for High-Dimensional Logistic Regression Models.

Rong Ma1,2,3, T Tony Cai1,2,3, Hongzhe Li1,2,3.   

Abstract

High-dimensional logistic regression is widely used in analyzing data with binary outcomes. In this paper, global testing and large-scale multiple testing for the regression coefficients are considered in both single- and two-regression settings. A test statistic for testing the global null hypothesis is constructed using a generalized low-dimensional projection for bias correction and its asymptotic null distribution is derived. A lower bound for the global testing is established, which shows that the proposed test is asymptotically minimax optimal over some sparsity range. For testing the individual coefficients simultaneously, multiple testing procedures are proposed and shown to control the false discovery rate (FDR) and falsely discovered variables (FDV) asymptotically. Simulation studies are carried out to examine the numerical performance of the proposed tests and their superiority over existing methods. The testing procedures are also illustrated by analyzing a data set of a metabolomics study that investigates the association between fecal metabolites and pediatric Crohn's disease and the effects of treatment on such associations.

Entities:  

Keywords:  False discovery rate; Global testing; Large-scale multiple testing; Minimax lower bound

Year:  2020        PMID: 34421157      PMCID: PMC8375316          DOI: 10.1080/01621459.2019.1699421

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  16 in total

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Authors:  Jeffrey C Barrett; Sarah Hansoul; Dan L Nicolae; Judy H Cho; Richard H Duerr; John D Rioux; Steven R Brant; Mark S Silverberg; Kent D Taylor; M Michael Barmada; Alain Bitton; Themistocles Dassopoulos; Lisa Wu Datta; Todd Green; Anne M Griffiths; Emily O Kistner; Michael T Murtha; Miguel D Regueiro; Jerome I Rotter; L Philip Schumm; A Hillary Steinhart; Stephan R Targan; Ramnik J Xavier; Cécile Libioulle; Cynthia Sandor; Mark Lathrop; Jacques Belaiche; Olivier Dewit; Ivo Gut; Simon Heath; Debby Laukens; Myriam Mni; Paul Rutgeerts; André Van Gossum; Diana Zelenika; Denis Franchimont; Jean-Pierre Hugot; Martine de Vos; Severine Vermeire; Edouard Louis; Lon R Cardon; Carl A Anderson; Hazel Drummond; Elaine Nimmo; Tariq Ahmad; Natalie J Prescott; Clive M Onnie; Sheila A Fisher; Jonathan Marchini; Jilur Ghori; Suzannah Bumpstead; Rhian Gwilliam; Mark Tremelling; Panos Deloukas; John Mansfield; Derek Jewell; Jack Satsangi; Christopher G Mathew; Miles Parkes; Michel Georges; Mark J Daly
Journal:  Nat Genet       Date:  2008-06-29       Impact factor: 38.330

Review 2.  L-Carnitine and intestinal inflammation.

Authors:  Geneviève Fortin
Journal:  Vitam Horm       Date:  2011       Impact factor: 3.421

3.  Joint testing and false discovery rate control in high-dimensional multivariate regression.

Authors:  Yin Xia; T Tony Cai; Hongzhe Li
Journal:  Biometrika       Date:  2018-02-16       Impact factor: 2.445

4.  Differential Markov random field analysis with an application to detecting differential microbial community networks.

Authors:  T T Cai; H Li; J Ma; Y Xia
Journal:  Biometrika       Date:  2019-04-22       Impact factor: 2.445

5.  Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions.

Authors:  Yin Xia; Tianxi Cai; T Tony Cai
Journal:  Biometrika       Date:  2015-03-02       Impact factor: 2.445

6.  Enzymes involved in L-carnitine biosynthesis are expressed by small intestinal enterocytes in mice: implications for gut health.

Authors:  Prem S Shekhawat; Srinivas Sonne; A Lee Carter; Dietrich Matern; Vadivel Ganapathy
Journal:  J Crohns Colitis       Date:  2012-09-21       Impact factor: 9.071

7.  Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease.

Authors:  James D Lewis; Eric Z Chen; Robert N Baldassano; Anthony R Otley; Anne M Griffiths; Dale Lee; Kyle Bittinger; Aubrey Bailey; Elliot S Friedman; Christian Hoffmann; Lindsey Albenberg; Rohini Sinha; Charlene Compher; Erin Gilroy; Lisa Nessel; Amy Grant; Christel Chehoud; Hongzhe Li; Gary D Wu; Frederic D Bushman
Journal:  Cell Host Microbe       Date:  2015-10-14       Impact factor: 21.023

8.  Studies on the role of acid sphingomyelinase and ceramide in the regulation of tumor necrosis factor alpha (TNFalpha)-converting enzyme activity and TNFalpha secretion in macrophages.

Authors:  Krasimira A Rozenova; Gergana M Deevska; Alexander A Karakashian; Mariana N Nikolova-Karakashian
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

9.  Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions.

Authors:  Yin Xia; Tianxi Cai; T Tony Cai
Journal:  Stat Sin       Date:  2018-01       Impact factor: 1.261

10.  HYPOTHESIS TESTING FOR HIGH-DIMENSIONAL SPARSE BINARY REGRESSION.

Authors:  Rajarshi Mukherjee; Natesh S Pillai; Xihong Lin
Journal:  Ann Stat       Date:  2015-02       Impact factor: 4.028

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2.  A Regularization-Based Adaptive Test for High-Dimensional Generalized Linear Models.

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Journal:  J Mach Learn Res       Date:  2020-07-26       Impact factor: 5.177

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4.  Simultaneous differential network analysis and classification for matrix-variate data with application to brain connectivity.

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