Literature DB >> 32802002

A Regularization-Based Adaptive Test for High-Dimensional Generalized Linear Models.

Chong Wu1, Gongjun Xu2, Xiaotong Shen3, Wei Pan4.   

Abstract

In spite of its urgent importance in the era of big data, testing high-dimensional parameters in generalized linear models (GLMs) in the presence of high-dimensional nuisance parameters has been largely under-studied, especially with regard to constructing powerful tests for general (and unknown) alternatives. Most existing tests are powerful only against certain alternatives and may yield incorrect Type I error rates under high-dimensional nuisance parameter situations. In this paper, we propose the adaptive interaction sum of powered score (aiSPU) test in the framework of penalized regression with a non-convex penalty, called truncated Lasso penalty (TLP), which can maintain correct Type I error rates while yielding high statistical power across a wide range of alternatives. To calculate its p-values analytically, we derive its asymptotic null distribution. Via simulations, its superior finite-sample performance is demonstrated over several representative existing methods. In addition, we apply it and other representative tests to an Alzheimer's Disease Neuroimaging Initiative (ADNI) data set, detecting possible gene-gender interactions for Alzheimer's disease. We also put R package "aispu" implementing the proposed test on GitHub.

Entities:  

Keywords:  Adaptive Test; Gene-Environmental Interaction; Truncated Lasso Penalty

Year:  2020        PMID: 32802002      PMCID: PMC7425805     

Source DB:  PubMed          Journal:  J Mach Learn Res        ISSN: 1532-4435            Impact factor:   5.177


  32 in total

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Journal:  Nat Genet       Date:  2016-08-29       Impact factor: 38.330

Review 8.  Detecting gene-gene interactions that underlie human diseases.

Authors:  Heather J Cordell
Journal:  Nat Rev Genet       Date:  2009-06       Impact factor: 53.242

9.  A modern maximum-likelihood theory for high-dimensional logistic regression.

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