Literature DB >> 34420242

Every protagonist has a sidekick: Structural aspects of human xeroderma pigmentosum-binding proteins in nucleotide excision repair.

Bruno César Feltes1,2,3.   

Abstract

The seven xeroderma pigmentosum proteins (XPps), XPA-XPG, coordinate the nucleotide excision repair (NER) pathway, promoting the excision of DNA lesions caused by exposition to ionizing radiation, majorly from ultraviolet light. Significant efforts are made to investigate NER since mutations in any of the seven XPps may cause the xeroderma pigmentosum and trichothiodystrophy diseases. However, these proteins collaborate with other pivotal players in all known NER steps to accurately exert their purposes. Therefore, in the old and ever-evolving field of DNA repair, it is imperative to reexamine and describe their structures to understand NER properly. This work provides an up-to-date review of the protein structural aspects of the closest partners that directly interact and influence XPps: RAD23B, CETN2, DDB1, RPA (RPA70, 32, and 14), p8 (GTF2H5), and ERCC1. Structurally and functionally vital domains, regions, and critical residues are reexamined, providing structural lessons and perspectives about these indispensable proteins in the NER and other DNA repair pathways. By gathering all data related to the major human xeroderma pigmentosum-interacting proteins, this review will aid newcomers on the subject and guide structural and functional future studies.
© 2021 The Protein Society.

Entities:  

Keywords:  DNA repair; GG-NER; NER; protein structure; xeroderma pigmentosum

Mesh:

Substances:

Year:  2021        PMID: 34420242      PMCID: PMC8521314          DOI: 10.1002/pro.4173

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  129 in total

1.  Interaction of nucleotide excision repair factors XPC-HR23B, XPA, and RPA with damaged DNA.

Authors:  Yu S Krasikova; N I Rechkunova; E A Maltseva; I O Petruseva; V N Silnikov; T S Zatsepin; T S Oretskaya; O D Schärer; O I Lavrik
Journal:  Biochemistry (Mosc)       Date:  2008-08       Impact factor: 2.487

2.  HHR23B, a human Rad23 homolog, stimulates XPC protein in nucleotide excision repair in vitro.

Authors:  K Sugasawa; C Masutani; A Uchida; T Maekawa; P J van der Spek; D Bootsma; J H Hoeijmakers; F Hanaoka
Journal:  Mol Cell Biol       Date:  1996-09       Impact factor: 4.272

3.  Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA.

Authors:  Elena Bochkareva; Sergey Korolev; Susan P Lees-Miller; Alexey Bochkarev
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

4.  Damaged DNA-binding protein 1 (DDB1) interacts with Cdh1 and modulates the function of APC/CCdh1.

Authors:  Xiao-Bin Lv; Fangyun Xie; Kaishun Hu; Yuanzhong Wu; Lin-Lin Cao; Xia Han; Yi Sang; Yi-Xin Zeng; Tiebang Kang
Journal:  J Biol Chem       Date:  2010-04-15       Impact factor: 5.157

5.  Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease.

Authors:  A M Sijbers; W L de Laat; R R Ariza; M Biggerstaff; Y F Wei; J G Moggs; K C Carter; B K Shell; E Evans; M C de Jong; S Rademakers; J de Rooij; N G Jaspers; J H Hoeijmakers; R D Wood
Journal:  Cell       Date:  1996-09-06       Impact factor: 41.582

6.  Virtual screening and biological evaluation of inhibitors targeting the XPA-ERCC1 interaction.

Authors:  Khaled H Barakat; Lars P Jordheim; Rolando Perez-Pineiro; David Wishart; Charles Dumontet; Jack A Tuszynski
Journal:  PLoS One       Date:  2012-12-14       Impact factor: 3.240

7.  Structures of transcription pre-initiation complex with TFIIH and Mediator.

Authors:  S Schilbach; M Hantsche; D Tegunov; C Dienemann; C Wigge; H Urlaub; P Cramer
Journal:  Nature       Date:  2017-11-01       Impact factor: 49.962

8.  Functional impacts of the ubiquitin-proteasome system on DNA damage recognition in global genome nucleotide excision repair.

Authors:  Wataru Sakai; Mayumi Yuasa-Sunagawa; Masayuki Kusakabe; Aiko Kishimoto; Takeshi Matsui; Yuki Kaneko; Jun-Ichi Akagi; Nicolas Huyghe; Masae Ikura; Tsuyoshi Ikura; Fumio Hanaoka; Masayuki Yokoi; Kaoru Sugasawa
Journal:  Sci Rep       Date:  2020-11-12       Impact factor: 4.379

9.  The TFIIH subunits p44/p62 act as a damage sensor during nucleotide excision repair.

Authors:  Jamie T Barnett; Jochen Kuper; Wolfgang Koelmel; Caroline Kisker; Neil M Kad
Journal:  Nucleic Acids Res       Date:  2020-11-09       Impact factor: 16.971

Review 10.  DNA repair endonuclease ERCC1-XPF as a novel therapeutic target to overcome chemoresistance in cancer therapy.

Authors:  Ewan M McNeil; David W Melton
Journal:  Nucleic Acids Res       Date:  2012-08-31       Impact factor: 16.971

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  2 in total

Review 1.  Every protagonist has a sidekick: Structural aspects of human xeroderma pigmentosum-binding proteins in nucleotide excision repair.

Authors:  Bruno César Feltes
Journal:  Protein Sci       Date:  2021-08-27       Impact factor: 6.725

2.  Homozygous CRISPR/Cas9 Knockout Generated a Novel Functionally Active Exon 1 Skipping XPA Variant in Melanoma Cells.

Authors:  Veronika Banicka; Marie Christine Martens; Rüdiger Panzer; David Schrama; Steffen Emmert; Lars Boeckmann; Alexander Thiem
Journal:  Int J Mol Sci       Date:  2022-10-01       Impact factor: 6.208

  2 in total

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