Literature DB >> 34374780

Reintegrating Biology Through the Nexus of Energy, Information, and Matter.

Kim L Hoke1, Sara L Zimmer2, Adam B Roddy3, Mary Jo Ondrechen4, Craig E Williamson5, Nicole R Buan6.   

Abstract

Information, energy, and matter are fundamental properties of all levels of biological organization, and life emerges from the continuous flux of matter, energy, and information. This perspective piece defines and explains each of the three pillars of this nexus. We propose that a quantitative characterization of the complex interconversions between matter, energy, and information that comprise this nexus will help us derive biological insights that connect phenomena across different levels of biological organization. We articulate examples from multiple biological scales that highlight how this nexus approach leads to a more complete understanding of the biological system. Metrics of energy, information, and matter can provide a common currency that helps link phenomena across levels of biological organization. The propagation of energy and information through levels of biological organization can result in emergent properties and system-wide changes that impact other hierarchical levels. Deeper consideration of measured imbalances in energy, information, and matter can help researchers identify key factors that influence system function at one scale, highlighting avenues to link phenomena across levels of biological organization and develop predictive models of biological systems.
© The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology.

Entities:  

Mesh:

Year:  2022        PMID: 34374780      PMCID: PMC8826246          DOI: 10.1093/icb/icab174

Source DB:  PubMed          Journal:  Integr Comp Biol        ISSN: 1540-7063            Impact factor:   3.392


  67 in total

1.  Stimulation of the GTPase activity of translation elongation factor G by ribosomal protein L7/12.

Authors:  A Savelsbergh; D Mohr; B Wilden; W Wintermeyer; M V Rodnina
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

2.  The problem of information transfer from the nucleic acids to proteins.

Authors:  G GAMOW; A RICH; M YCAS
Journal:  Adv Biol Med Phys       Date:  1956

Review 3.  Automated protein function prediction--the genomic challenge.

Authors:  Iddo Friedberg
Journal:  Brief Bioinform       Date:  2006-05-23       Impact factor: 11.622

Review 4.  Proton-coupled electron transfer: the mechanistic underpinning for radical transport and catalysis in biology.

Authors:  Steven Y Reece; Justin M Hodgkiss; JoAnne Stubbe; Daniel G Nocera
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 5.  Cracking the Neural Code for Sensory Perception by Combining Statistics, Intervention, and Behavior.

Authors:  Stefano Panzeri; Christopher D Harvey; Eugenio Piasini; Peter E Latham; Tommaso Fellin
Journal:  Neuron       Date:  2017-02-08       Impact factor: 17.173

6.  Second-order selection for evolvability in a large Escherichia coli population.

Authors:  Robert J Woods; Jeffrey E Barrick; Tim F Cooper; Utpala Shrestha; Mark R Kauth; Richard E Lenski
Journal:  Science       Date:  2011-03-18       Impact factor: 47.728

7.  Demonstration of physical interactions between consecutive enzymes of the citric acid cycle and of the aspartate-malate shuttle. A study involving fumarase, malate dehydrogenase, citrate synthesis and aspartate aminotransferase.

Authors:  S Beeckmans; L Kanarek
Journal:  Eur J Biochem       Date:  1981-07

8.  Subcellular and supracellular mechanical stress prescribes cytoskeleton behavior in Arabidopsis cotyledon pavement cells.

Authors:  Arun Sampathkumar; Pawel Krupinski; Raymond Wightman; Pascale Milani; Alexandre Berquand; Arezki Boudaoud; Olivier Hamant; Henrik Jönsson; Elliot M Meyerowitz
Journal:  Elife       Date:  2014-04-16       Impact factor: 8.140

Review 9.  Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Authors:  Stefanie Widder; Rosalind J Allen; Thomas Pfeiffer; Thomas P Curtis; Carsten Wiuf; William T Sloan; Otto X Cordero; Sam P Brown; Babak Momeni; Wenying Shou; Helen Kettle; Harry J Flint; Andreas F Haas; Béatrice Laroche; Jan-Ulrich Kreft; Paul B Rainey; Shiri Freilich; Stefan Schuster; Kim Milferstedt; Jan R van der Meer; Tobias Groβkopf; Jef Huisman; Andrew Free; Cristian Picioreanu; Christopher Quince; Isaac Klapper; Simon Labarthe; Barth F Smets; Harris Wang; Orkun S Soyer
Journal:  ISME J       Date:  2016-03-29       Impact factor: 10.302

10.  Why plants make puzzle cells, and how their shape emerges.

Authors:  Aleksandra Sapala; Adam Runions; Anne-Lise Routier-Kierzkowska; Mainak Das Gupta; Lilan Hong; Hugo Hofhuis; Stéphane Verger; Gabriella Mosca; Chun-Biu Li; Angela Hay; Olivier Hamant; Adrienne Hk Roeder; Miltos Tsiantis; Przemyslaw Prusinkiewicz; Richard S Smith
Journal:  Elife       Date:  2018-02-27       Impact factor: 8.140

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