Literature DB >> 21415350

Second-order selection for evolvability in a large Escherichia coli population.

Robert J Woods1, Jeffrey E Barrick, Tim F Cooper, Utpala Shrestha, Mark R Kauth, Richard E Lenski.   

Abstract

In theory, competition between asexual lineages can lead to second-order selection for greater evolutionary potential. To test this hypothesis, we revived a frozen population of Escherichia coli from a long-term evolution experiment and compared the fitness and ultimate fates of four genetically distinct clones. Surprisingly, two clones with beneficial mutations that would eventually take over the population had significantly lower competitive fitness than two clones with mutations that later went extinct. By replaying evolution many times from these clones, we showed that the eventual winners likely prevailed because they had greater potential for further adaptation. Genetic interactions that reduce the benefit of certain regulatory mutations in the eventual losers appear to explain, at least in part, why they were outcompeted.

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Year:  2011        PMID: 21415350      PMCID: PMC3176658          DOI: 10.1126/science.1198914

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  26 in total

1.  The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli.

Authors:  Y Xu; R J Heath; Z Li; C O Rock; S W White
Journal:  J Biol Chem       Date:  2001-02-13       Impact factor: 5.157

2.  Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria.

Authors:  O Tenaillon; B Toupance; H Le Nagard; F Taddei; B Godelle
Journal:  Genetics       Date:  1999-06       Impact factor: 4.562

3.  Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection.

Authors:  Estelle Crozat; Nadège Philippe; Richard E Lenski; Johannes Geiselmann; Dominique Schneider
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

Review 4.  Perspective: Sign epistasis and genetic constraint on evolutionary trajectories.

Authors:  Daniel M Weinreich; Richard A Watson; Lin Chao
Journal:  Evolution       Date:  2005-06       Impact factor: 3.694

5.  An equivalence principle for the incorporation of favorable mutations in asexual populations.

Authors:  Matthew Hegreness; Noam Shoresh; Daniel Hartl; Roy Kishony
Journal:  Science       Date:  2006-03-17       Impact factor: 47.728

6.  The fate of competing beneficial mutations in an asexual population.

Authors:  P J Gerrish; R E Lenski
Journal:  Genetica       Date:  1998       Impact factor: 1.082

7.  Diminishing returns from mutation supply rate in asexual populations.

Authors:  J A Arjan; M Visser; C W Zeyl; P J Gerrish; J L Blanchard; R E Lenski
Journal:  Science       Date:  1999-01-15       Impact factor: 47.728

8.  Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

Authors:  V S Cooper; D Schneider; M Blot; R E Lenski
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

9.  Evolvability of an RNA virus is determined by its mutational neighbourhood.

Authors:  C L Burch; L Chao
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

10.  Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli.

Authors:  Tim F Cooper; Daniel E Rozen; Richard E Lenski
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-21       Impact factor: 11.205

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  139 in total

1.  Historical contingency affects signaling strategies and competitive abilities in evolving populations of simulated robots.

Authors:  Steffen Wischmann; Dario Floreano; Laurent Keller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-03       Impact factor: 11.205

2.  The battle of the SNPs.

Authors:  Tim Downing
Journal:  Nat Rev Microbiol       Date:  2011-12-05       Impact factor: 60.633

3.  Real time forecasting of near-future evolution.

Authors:  Philip J Gerrish; Paul D Sniegowski
Journal:  J R Soc Interface       Date:  2012-04-18       Impact factor: 4.118

4.  Following evolution of bacterial antibiotic resistance in real time.

Authors:  Adam Z Rosenthal; Michael B Elowitz
Journal:  Nat Genet       Date:  2011-12-27       Impact factor: 38.330

Review 5.  A road map for the development of community systems (CoSy) biology.

Authors:  Karsten Zengler; Bernhard O Palsson
Journal:  Nat Rev Microbiol       Date:  2012-03-27       Impact factor: 60.633

Review 6.  New insights into bacterial adaptation through in vivo and in silico experimental evolution.

Authors:  Thomas Hindré; Carole Knibbe; Guillaume Beslon; Dominique Schneider
Journal:  Nat Rev Microbiol       Date:  2012-03-27       Impact factor: 60.633

7.  Environmental change exposes beneficial epistatic interactions in a catalytic RNA.

Authors:  Eric J Hayden; Andreas Wagner
Journal:  Proc Biol Sci       Date:  2012-06-20       Impact factor: 5.349

8.  Repeatability and contingency in the evolution of a key innovation in phage lambda.

Authors:  Justin R Meyer; Devin T Dobias; Joshua S Weitz; Jeffrey E Barrick; Ryan T Quick; Richard E Lenski
Journal:  Science       Date:  2012-01-27       Impact factor: 47.728

Review 9.  Engineering reduced evolutionary potential for synthetic biology.

Authors:  Brian A Renda; Michael J Hammerling; Jeffrey E Barrick
Journal:  Mol Biosyst       Date:  2014-02-21

Review 10.  Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution.

Authors:  Christopher H Chandler; Sudarshan Chari; Ian Dworkin
Journal:  Trends Genet       Date:  2013-02-28       Impact factor: 11.639

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