Literature DB >> 16873123

Proton-coupled electron transfer: the mechanistic underpinning for radical transport and catalysis in biology.

Steven Y Reece1, Justin M Hodgkiss, JoAnne Stubbe, Daniel G Nocera.   

Abstract

Charge transport and catalysis in enzymes often rely on amino acid radicals as intermediates. The generation and transport of these radicals are synonymous with proton-coupled electron transfer (PCET), which intrinsically is a quantum mechanical effect as both the electron and proton tunnel. The caveat to PCET is that proton transfer (PT) is fundamentally limited to short distances relative to electron transfer (ET). This predicament is resolved in biology by the evolution of enzymes to control PT and ET coordinates on highly different length scales. In doing so, the enzyme imparts exquisite thermodynamic and kinetic controls over radical transport and radical-based catalysis at cofactor active sites. This discussion will present model systems containing orthogonal ET and PT pathways, thereby allowing the proton and electron tunnelling events to be disentangled. Against this mechanistic backdrop, PCET catalysis of oxygen-oxygen bond activation by mono-oxygenases is captured at biomimetic porphyrin redox platforms. The discussion concludes with the case study of radical-based quantum catalysis in a natural biological enzyme, class I Escherichia coli ribonucleotide reductase. Studies are presented that show the enzyme utilizes both collinear and orthogonal PCET to transport charge from an assembled diiron-tyrosyl radical cofactor to the active site over 35A away via an amino acid radical-hopping pathway spanning two protein subunits.

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Year:  2006        PMID: 16873123      PMCID: PMC1647304          DOI: 10.1098/rstb.2006.1874

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  66 in total

1.  Site-specific replacement of a conserved tyrosine in ribonucleotide reductase with an aniline amino acid: a mechanistic probe for a redox-active tyrosine.

Authors:  Michelle C Y Chang; Cyril S Yee; Daniel G Nocera; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2004-12-29       Impact factor: 15.419

Review 2.  Electron transfer in proteins.

Authors:  H B Gray; J R Winkler
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

3.  Three-dimensional structure of the free radical protein of ribonucleotide reductase.

Authors:  P Nordlund; B M Sjöberg; H Eklund
Journal:  Nature       Date:  1990-06-14       Impact factor: 49.962

4.  Intraprotein radical transfer during photoactivation of DNA photolyase.

Authors:  C Aubert; M H Vos; P Mathis; A P Eker; K Brettel
Journal:  Nature       Date:  2000-06-01       Impact factor: 49.962

5.  Displacement of the tyrosyl radical cofactor in ribonucleotide reductase obtained by single-crystal high-field EPR and 1.4-A x-ray data.

Authors:  Martin Högbom; Marcus Galander; Martin Andersson; Matthias Kolberg; Wulf Hofbauer; Günter Lassmann; Pär Nordlund; Friedhelm Lendzian
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-06       Impact factor: 11.205

6.  High-resolution crystal structure of cytochrome P450cam.

Authors:  T L Poulos; B C Finzel; A J Howard
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

7.  Tyrosine radicals are involved in the photosynthetic oxygen-evolving system.

Authors:  B A Barry; G T Babcock
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

Review 8.  The radical chemistry of galactose oxidase.

Authors:  James W Whittaker
Journal:  Arch Biochem Biophys       Date:  2005-01-01       Impact factor: 4.013

9.  Direct tyrosine oxidation using the MLCT excited states of rhenium polypyridyl complexes.

Authors:  Steven Y Reece; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2005-07-06       Impact factor: 15.419

Review 10.  The function and characteristics of tyrosyl radical cofactors.

Authors:  Curtis W Hoganson; Cecilia Tommos
Journal:  Biochim Biophys Acta       Date:  2004-04-12
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  93 in total

1.  Proton Coupled Electron Transfer and Redox Active Tyrosines: Structure and Function of the Tyrosyl Radicals in Ribonucleotide Reductase and Photosystem II.

Authors:  Bridgette A Barry; Jun Chen; James Keough; David Jenson; Adam Offenbacher; Cynthia Pagba
Journal:  J Phys Chem Lett       Date:  2012-02-08       Impact factor: 6.475

2.  A hot oxidant, 3-NO2Y122 radical, unmasks conformational gating in ribonucleotide reductase.

Authors:  Kenichi Yokoyama; Ulla Uhlin; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2010-11-03       Impact factor: 15.419

3.  Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase.

Authors:  Nozomi Ando; Edward J Brignole; Christina M Zimanyi; Michael A Funk; Kenichi Yokoyama; Francisco J Asturias; Joanne Stubbe; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

4.  Molecular Strategies of Deoxynucleotide Triphosphate Supply Inhibition Used in the Treatment of Gynecologic Malignancies.

Authors:  Charles A Kunos; Tomas Radivoyevitch
Journal:  Gynecol Obstet (Sunnyvale)       Date:  2011-12-10

5.  Investigation of in vivo diferric tyrosyl radical formation in Saccharomyces cerevisiae Rnr2 protein: requirement of Rnr4 and contribution of Grx3/4 AND Dre2 proteins.

Authors:  Yan Zhang; Lili Liu; Xiaorong Wu; Xiuxiang An; JoAnne Stubbe; Mingxia Huang
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

6.  Reversible voltammograms and a Pourbaix diagram for a protein tyrosine radical.

Authors:  Bruce W Berry; Melissa C Martínez-Rivera; Cecilia Tommos
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-06       Impact factor: 11.205

7.  Molecular basis of intramolecular electron transfer in proteins during radical-mediated oxidations: computer simulation studies in model tyrosine-cysteine peptides in solution.

Authors:  Ariel A Petruk; Silvina Bartesaghi; Madia Trujillo; Darío A Estrin; Daniel Murgida; Balaraman Kalyanaraman; Marcelo A Marti; Rafael Radi
Journal:  Arch Biochem Biophys       Date:  2012-05-26       Impact factor: 4.013

8.  pH-Driven Mechanistic Switching from Electron Transfer to Energy Transfer between [Ru(bpy)3]2+ and Ferrocene Derivatives.

Authors:  Claire Drolen; Eric Conklin; Stephen J Hetterich; Aditi Krishnamurthy; Gabriel A Andrade; John L Dimeglio; Maxwell I Martin; Linh K Tran; Glenn P A Yap; Joel Rosenthal; Elizabeth R Young
Journal:  J Am Chem Soc       Date:  2018-08-02       Impact factor: 15.419

Review 9.  Proton-Coupled Electron Transfer in Organic Synthesis: Fundamentals, Applications, and Opportunities.

Authors:  David C Miller; Kyle T Tarantino; Robert R Knowles
Journal:  Top Curr Chem (Cham)       Date:  2016-05-09

10.  Photochemical Tyrosine Oxidation with a Hydrogen-Bonded Proton Acceptor by Bidirectional Proton-Coupled Electron Transfer.

Authors:  Arturo A Pizano; Jay L Yang; Daniel G Nocera
Journal:  Chem Sci       Date:  2012-08       Impact factor: 9.825

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