Literature DB >> 34357346

An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D.

Martina Häckl1, Philipp Tauber2, Frank Schweda2, Helena U Zacharias3,4, Michael Altenbuchinger5, Peter J Oefner1, Wolfram Gronwald1.   

Abstract

NMR spectroscopy is a widely used method for the detection and quantification of metabolites in complex biological fluids. However, the large number of metabolites present in a biological sample such as urine or plasma leads to considerable signal overlap in one-dimensional NMR spectra, which in turn hampers both signal identification and quantification. As a consequence, we have developed an easy to use R-package that allows the fully automated deconvolution of overlapping signals in the underlying Lorentzian line-shapes. We show that precise integral values are computed, which are required to obtain both relative and absolute quantitative information. The algorithm is independent of any knowledge of the corresponding metabolites, which also allows the quantitative description of features of yet unknown identity.

Entities:  

Keywords:  1D; NMR; deconvolution; metabolites; quantification; signal identification

Year:  2021        PMID: 34357346     DOI: 10.3390/metabo11070452

Source DB:  PubMed          Journal:  Metabolites        ISSN: 2218-1989


  18 in total

1.  icoshift: A versatile tool for the rapid alignment of 1D NMR spectra.

Authors:  F Savorani; G Tomasi; S B Engelsen
Journal:  J Magn Reson       Date:  2009-11-18       Impact factor: 2.229

2.  A Novel Metabolic Signature To Predict the Requirement of Dialysis or Renal Transplantation in Patients with Chronic Kidney Disease.

Authors:  Helena U Zacharias; Michael Altenbuchinger; Ulla T Schultheiss; Claudia Samol; Fruzsina Kotsis; Inga Poguntke; Peggy Sekula; Jan Krumsiek; Anna Köttgen; Rainer Spang; Peter J Oefner; Wolfram Gronwald
Journal:  J Proteome Res       Date:  2019-03-12       Impact factor: 4.466

3.  Disease burden and risk profile in referred patients with moderate chronic kidney disease: composition of the German Chronic Kidney Disease (GCKD) cohort.

Authors:  Stephanie Titze; Matthias Schmid; Anna Köttgen; Martin Busch; Jürgen Floege; Christoph Wanner; Florian Kronenberg; Kai-Uwe Eckardt
Journal:  Nephrol Dial Transplant       Date:  2014-09-30       Impact factor: 5.992

4.  BATMAN--an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model.

Authors:  Jie Hao; William Astle; Maria De Iorio; Timothy M D Ebbels
Journal:  Bioinformatics       Date:  2012-05-26       Impact factor: 6.937

Review 5.  Methodological consensus on clinical proton MRS of the brain: Review and recommendations.

Authors:  Martin Wilson; Ovidiu Andronesi; Peter B Barker; Robert Bartha; Alberto Bizzi; Patrick J Bolan; Kevin M Brindle; In-Young Choi; Cristina Cudalbu; Ulrike Dydak; Uzay E Emir; Ramon G Gonzalez; Stephan Gruber; Rolf Gruetter; Rakesh K Gupta; Arend Heerschap; Anke Henning; Hoby P Hetherington; Petra S Huppi; Ralph E Hurd; Kejal Kantarci; Risto A Kauppinen; Dennis W J Klomp; Roland Kreis; Marijn J Kruiskamp; Martin O Leach; Alexander P Lin; Peter R Luijten; Małgorzata Marjańska; Andrew A Maudsley; Dieter J Meyerhoff; Carolyn E Mountford; Paul G Mullins; James B Murdoch; Sarah J Nelson; Ralph Noeske; Gülin Öz; Julie W Pan; Andrew C Peet; Harish Poptani; Stefan Posse; Eva-Maria Ratai; Nouha Salibi; Tom W J Scheenen; Ian C P Smith; Brian J Soher; Ivan Tkáč; Daniel B Vigneron; Franklyn A Howe
Journal:  Magn Reson Med       Date:  2019-03-28       Impact factor: 4.668

6.  Quantitative measures of myo-IP6 in soil using solution 31P NMR spectroscopy and spectral deconvolution fitting including a broad signal.

Authors:  Jolanda E Reusser; René Verel; Emmanuel Frossard; Timothy I McLaren
Journal:  Environ Sci Process Impacts       Date:  2020-04-29       Impact factor: 4.238

7.  Signature Mapping (SigMa): An efficient approach for processing complex human urine 1H NMR metabolomics data.

Authors:  Bekzod Khakimov; Nabiollah Mobaraki; Alessia Trimigno; Violetta Aru; Søren Balling Engelsen
Journal:  Anal Chim Acta       Date:  2020-02-13       Impact factor: 6.558

8.  Spectral deconvolution in electrophoretic NMR to investigate the migration of neutral molecules in electrolytes.

Authors:  Florian Schmidt; Andrea Pugliese; Catherine C Santini; Franca Castiglione; Monika Schönhoff
Journal:  Magn Reson Chem       Date:  2020-01-08       Impact factor: 2.447

9.  Deconvolution of Complex 1D NMR Spectra Using Objective Model Selection.

Authors:  Travis S Hughes; Henry D Wilson; Ian Mitchelle S de Vera; Douglas J Kojetin
Journal:  PLoS One       Date:  2015-08-04       Impact factor: 3.240

10.  Robust Metabolite Quantification from J-Compensated 2D 1H-13C-HSQC Experiments.

Authors:  Alexander Weitzel; Claudia Samol; Peter J Oefner; Wolfram Gronwald
Journal:  Metabolites       Date:  2020-11-07
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