Literature DB >> 3435148

Adsorption of DNA to sand and variable degradation rates of adsorbed DNA.

M G Lorenz1, W Wackernagel.   

Abstract

Adsorption and desorption of DNA and degradation of adsorbed DNA by DNase I were studied by using a flowthrough system of sand-filled glass columns. Maximum adsorption at 23 degrees C occurred within 2 h. The amounts of DNA which adsorbed to sand increased with the salt concentration (0.1 to 4 M NaCl and 1 mM to 0.2 M MgCl2), salt valency (Na+ less than Mg2+ and Ca2+), and pH (5 to 9). Maximum desorption of DNA from sand (43 to 59%) was achieved when columns were eluted with NaPO4 and NaCl for 6 h or with EDTA for 1 h. DNA did not desorb in the presence of detergents. It is concluded that adsorption proceeded by physical and chemical (Mg2+ bridging) interaction between the DNA and sand surfaces. Degradability by DNase I decreased upon adsorption of transforming DNA. When DNA adsorbed in the presence of 50 mM MgCl2, the degradation rate was higher than when it adsorbed in the presence of 20 mM MgCl2. The sensitivity to degradation of DNA adsorbed to sand at 50 mM MgCl2 decreased when the columns were eluted with 0.1 mM MgCl2 or 100 mM EDTA before application of DNase I. This indicates that at least two types of DNA-sand complexes with different accessibilities of adsorbed DNA to DNase I existed. The degradability of DNA adsorbed to minor mineral fractions (feldspar and heavy minerals) of the sand differed from that of quartz-adsorbed DNA.

Entities:  

Mesh:

Substances:

Year:  1987        PMID: 3435148      PMCID: PMC204227          DOI: 10.1128/aem.53.12.2948-2952.1987

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  3 in total

1.  Degradation of dead microbial biomass in a marine sediment.

Authors:  J A Novitsky
Journal:  Appl Environ Microbiol       Date:  1986-09       Impact factor: 4.792

2.  Protection of sediment-adsorbed transforming DNA against enzymatic inactivation.

Authors:  B W Aardema; M G Lorenz; W E Krumbein
Journal:  Appl Environ Microbiol       Date:  1983-08       Impact factor: 4.792

3.  Modifications of the diphenylamine reaction giving increased sensitivity and simplicity in the estimation of DNA.

Authors:  G M Richards
Journal:  Anal Biochem       Date:  1974-02       Impact factor: 3.365

  3 in total
  63 in total

1.  Pelagic-benthic coupling of nucleic acids in an abyssal location of the northeastern Atlantic Ocean.

Authors:  A Dell'Anno; M Fabiano; M L Mei; R Danovaro
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

Review 2.  Genetic exchange in the environment.

Authors:  J P Coughter; G J Stewart
Journal:  Antonie Van Leeuwenhoek       Date:  1989       Impact factor: 2.271

3.  Transformation of Bacillus subtilis by DNA bound on montmorillonite and effect of DNase on the transforming ability of bound DNA.

Authors:  M Khanna; G Stotzky
Journal:  Appl Environ Microbiol       Date:  1992-06       Impact factor: 4.792

4.  Degradation of adsorbed protein by attached bacteria in relationship to surface hydrophobicity.

Authors:  M O Samuelsson; D L Kirchman
Journal:  Appl Environ Microbiol       Date:  1990-12       Impact factor: 4.792

5.  Turnover of extracellular DNA in eutrophic and oligotrophic freshwater environments of southwest Florida.

Authors:  J H Paul; W H Jeffrey; A W David; M F Deflaun; L H Cazares
Journal:  Appl Environ Microbiol       Date:  1989-07       Impact factor: 4.792

6.  Detection of horizontal gene transfer by natural transformation in native and introduced species of bacteria in marine and synthetic sediments.

Authors:  G J Stewart; C D Sinigalliano
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

7.  Effects of DNA polymer length on its adsorption to soils.

Authors:  A V Ogram; M L Mathot; J B Harsh; J Boyle; C A Pettigrew
Journal:  Appl Environ Microbiol       Date:  1994-02       Impact factor: 4.792

8.  Persistence of free plasmid DNA in soil monitored by various methods, including a transformation assay.

Authors:  G Romanowski; M G Lorenz; G Sayler; W Wackernagel
Journal:  Appl Environ Microbiol       Date:  1992-09       Impact factor: 4.792

9.  A molecular approach to identify active microbes in environmental eukaryote clone libraries.

Authors:  Thorsten Stoeck; Alexandra Zuendorf; Hans-Werner Breiner; Anke Behnke
Journal:  Microb Ecol       Date:  2007-02       Impact factor: 4.552

Review 10.  Ancient and modern environmental DNA.

Authors:  Mikkel Winther Pedersen; Søren Overballe-Petersen; Luca Ermini; Clio Der Sarkissian; James Haile; Micaela Hellstrom; Johan Spens; Philip Francis Thomsen; Kristine Bohmann; Enrico Cappellini; Ida Bærholm Schnell; Nathan A Wales; Christian Carøe; Paula F Campos; Astrid M Z Schmidt; M Thomas P Gilbert; Anders J Hansen; Ludovic Orlando; Eske Willerslev
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.