Literature DB >> 16349168

Effects of DNA polymer length on its adsorption to soils.

A V Ogram1, M L Mathot, J B Harsh, J Boyle, C A Pettigrew.   

Abstract

Three different DNA fragments ranging size from 2.69 kbp (1.75 MDa) to 23 kbp (14.95 MDa) were used as tracers to study the adsorption of polydisperse solutions of calf thymus DNA to eight model soils. The adsorption of the three tracers to all soils was described by the Freundlich adsorption model, with adsorption coefficients (K) ranging from 1.1 for acid-washed sand to over 300 for one soil. An inverse relationship between tracer size and K was observed with six of the eight soils, indicating that smaller fragments are sorbed preferentially versus larger fragments in these soils. No significant correlation between K and the organic carbon contents, clay contents, pHs, or cation exchange capacities of the model soils was observed.

Entities:  

Year:  1994        PMID: 16349168      PMCID: PMC201325          DOI: 10.1128/aem.60.2.393-396.1994

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  7 in total

1.  Transformation of Bacillus subtilis by DNA bound on montmorillonite and effect of DNase on the transforming ability of bound DNA.

Authors:  M Khanna; G Stotzky
Journal:  Appl Environ Microbiol       Date:  1992-06       Impact factor: 4.792

2.  Protection of sediment-adsorbed transforming DNA against enzymatic inactivation.

Authors:  B W Aardema; M G Lorenz; W E Krumbein
Journal:  Appl Environ Microbiol       Date:  1983-08       Impact factor: 4.792

3.  Adsorption of plasmid DNA to mineral surfaces and protection against DNase I.

Authors:  G Romanowski; M G Lorenz; W Wackernagel
Journal:  Appl Environ Microbiol       Date:  1991-04       Impact factor: 4.792

4.  Duplication of a 2,4-dichlorophenoxyacetic acid monooxygenase gene in Alcaligenes eutrophus JMP134(pJP4).

Authors:  E J Perkins; P F Lurquin
Journal:  J Bacteriol       Date:  1988-12       Impact factor: 3.490

5.  Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4.

Authors:  E J Perkins; M P Gordon; O Caceres; P F Lurquin
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

6.  Adsorption of DNA to sand and variable degradation rates of adsorbed DNA.

Authors:  M G Lorenz; W Wackernagel
Journal:  Appl Environ Microbiol       Date:  1987-12       Impact factor: 4.792

7.  Cloning, physical mapping and expression of chromosomal genes specifying degradation of the herbicide 2,4,5-T by Pseudomonas cepacia AC1100.

Authors:  U M Sangodkar; P J Chapman; A M Chakrabarty
Journal:  Gene       Date:  1988-11-30       Impact factor: 3.688

  7 in total
  20 in total

1.  Quantification of bias related to the extraction of DNA directly from soils.

Authors:  A Frostegård; S Courtois; V Ramisse; S Clerc; D Bernillon; F Le Gall; P Jeannin; X Nesme; P Simonet
Journal:  Appl Environ Microbiol       Date:  1999-12       Impact factor: 4.792

2.  Clay-nucleic acid complexes: characteristics and implications for the preservation of genetic material in primeval habitats.

Authors:  M Franchi; E Bramanti; L M Bonzi; P L Orioli; C Vettori; E Gallori
Journal:  Orig Life Evol Biosph       Date:  1999-05       Impact factor: 1.950

3.  Simultaneous recovery of RNA and DNA from soils and sediments.

Authors:  R A Hurt; X Qiu; L Wu; Y Roh; A V Palumbo; J M Tiedje; J Zhou
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

4.  Culture- and quantitative IS900 real-time PCR-based analysis of the persistence of Mycobacterium avium subsp. paratuberculosis in a controlled dairy cow farm environment.

Authors:  M Moravkova; V Babak; A Kralova; I Pavlik; I Slana
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

Review 5.  DNA in soil: adsorption, genetic transformation, molecular evolution and genetic microchip.

Authors:  J T Trevors
Journal:  Antonie Van Leeuwenhoek       Date:  1996-07       Impact factor: 2.271

6.  The Significance of Microbe-Mineral-Biomarker Interactions in the Detection of Life on Mars and Beyond.

Authors:  Wilfred F M Röling; Joost W Aerts; C H Lucas Patty; Inge Loes ten Kate; Pascale Ehrenfreund; Susana O L Direito
Journal:  Astrobiology       Date:  2015-06       Impact factor: 4.335

7.  Direct ribosome isolation from soil to extract bacterial rRNA for community analysis.

Authors:  A Felske; B Engelen; U Nübel; H Backhaus
Journal:  Appl Environ Microbiol       Date:  1996-11       Impact factor: 4.792

8.  Natural transformation and availability of transforming DNA to Acinetobacter calcoaceticus in soil microcosms.

Authors:  K M Nielsen; M D van Weerelt; T N Berg; A M Bones; A N Hagler; J D van Elsas
Journal:  Appl Environ Microbiol       Date:  1997-05       Impact factor: 4.792

9.  Induced Natural Transformation of Acinetobacter calcoaceticus in Soil Microcosms.

Authors:  K M Nielsen; A M Bones; J D Van Elsas
Journal:  Appl Environ Microbiol       Date:  1997-10       Impact factor: 4.792

10.  Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method.

Authors:  S Y Lee; J Bollinger; D Bezdicek; A Ogram
Journal:  Appl Environ Microbiol       Date:  1996-10       Impact factor: 4.792

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