Literature DB >> 34338432

Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EM.

Shintaroh Kubo1, Shun Kai Yang1, Corbin S Black1, Daniel Dai1, Melissa Valente-Paterno1, Jacek Gaertig2, Muneyoshi Ichikawa3,4, Khanh Huy Bui1,5.   

Abstract

Cilia are thin microtubule-based protrusions of eukaryotic cells. The swimming of ciliated protists and sperm cells is propelled by the beating of cilia. Cilia propagate the flow of mucus in the trachea and protect the human body from viral infections. The main force generators of ciliary beating are the outer dynein arms (ODAs) which attach to the doublet microtubules. The bending of cilia is driven by the ODAs' conformational changes caused by ATP hydrolysis. Here, we report the native ODA complex structure attaching to the doublet microtubule by cryo-electron microscopy. The structure reveals how the ODA complex is attached to the doublet microtubule via the docking complex in its native state. Combined with coarse-grained molecular dynamic simulations, we present a model of how the attachment of the ODA to the doublet microtubule induces remodeling and activation of the ODA complex.
© 2021 The Authors.

Entities:  

Keywords:  cilia; cryo-electron microscopy; doublet microtubule; outer arm dynein

Mesh:

Substances:

Year:  2021        PMID: 34338432      PMCID: PMC8419702          DOI: 10.15252/embr.202152911

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   9.071


  68 in total

1.  Predicting coiled coils from protein sequences.

Authors:  A Lupas; M Van Dyke; J Stock
Journal:  Science       Date:  1991-05-24       Impact factor: 47.728

2.  Whole-exome sequencing identifies a novel CCDC151 mutation, c.325G>T (p.E109X), in a patient with primary ciliary dyskinesia and situs inversus.

Authors:  Weizhi Zhang; Dongping Li; Shijie Wei; Ting Guo; Jian Wang; Hong Luo; Yifeng Yang; Zhiping Tan
Journal:  J Hum Genet       Date:  2018-11-30       Impact factor: 3.172

3.  Structure of dimeric axonemal dynein in cilia suggests an alternative mechanism of force generation.

Authors:  Hironori Ueno; Khanh Huy Bui; Takuji Ishikawa; Yohsuke Imai; Takami Yamaguchi; Takashi Ishikawa
Journal:  Cytoskeleton (Hoboken)       Date:  2014-07-02

4.  Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy.

Authors:  J M de la Rosa-Trevín; A Quintana; L Del Cano; A Zaldívar; I Foche; J Gutiérrez; J Gómez-Blanco; J Burguet-Castell; J Cuenca-Alba; V Abrishami; J Vargas; J Otón; G Sharov; J L Vilas; J Navas; P Conesa; M Kazemi; R Marabini; C O S Sorzano; J M Carazo
Journal:  J Struct Biol       Date:  2016-04-20       Impact factor: 2.867

5.  Bending patterns of Chlamydomonas flagella: IV. Mutants with defects in inner and outer dynein arms indicate differences in dynein arm function.

Authors:  C J Brokaw; R Kamiya
Journal:  Cell Motil Cytoskeleton       Date:  1987

6.  Docking-complex-independent alignment of Chlamydomonas outer dynein arms with 24-nm periodicity in vitro.

Authors:  Toshiyuki Oda; Tatsuki Abe; Haruaki Yanagisawa; Masahide Kikkawa
Journal:  J Cell Sci       Date:  2016-03-01       Impact factor: 5.285

7.  Structure of the Decorated Ciliary Doublet Microtubule.

Authors:  Meisheng Ma; Mihaela Stoyanova; Griffin Rademacher; Susan K Dutcher; Alan Brown; Rui Zhang
Journal:  Cell       Date:  2019-10-24       Impact factor: 41.582

8.  Shulin packages axonemal outer dynein arms for ciliary targeting.

Authors:  Girish R Mali; Ferdos Abid Ali; Clinton K Lau; Farida Begum; Jérôme Boulanger; Jonathan D Howe; Zhuo A Chen; Juri Rappsilber; Mark Skehel; Andrew P Carter
Journal:  Science       Date:  2021-02-26       Impact factor: 47.728

9.  Axonemal dynein light chain-1 locates at the microtubule-binding domain of the γ heavy chain.

Authors:  Muneyoshi Ichikawa; Kei Saito; Haru-Aki Yanagisawa; Toshiki Yagi; Ritsu Kamiya; Shin Yamaguchi; Junichiro Yajima; Yasuharu Kushida; Kentaro Nakano; Osamu Numata; Yoko Y Toyoshima
Journal:  Mol Biol Cell       Date:  2015-09-23       Impact factor: 4.138

10.  Structure of a microtubule-bound axonemal dynein.

Authors:  Travis Walton; Hao Wu; Alan Brown
Journal:  Nat Commun       Date:  2021-01-20       Impact factor: 14.919

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  6 in total

1.  Structure of Motile Cilia.

Authors:  Takashi Ishikawa
Journal:  Subcell Biochem       Date:  2022

2.  Structure of dynein-dynactin on microtubules shows tandem adaptor binding.

Authors:  Sami Chaaban; Andrew P Carter
Journal:  Nature       Date:  2022-09-07       Impact factor: 69.504

3.  Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EM.

Authors:  Shintaroh Kubo; Shun Kai Yang; Corbin S Black; Daniel Dai; Melissa Valente-Paterno; Jacek Gaertig; Muneyoshi Ichikawa; Khanh Huy Bui
Journal:  EMBO Rep       Date:  2021-08-02       Impact factor: 9.071

4.  Structural organization of the intermediate and light chain complex of Chlamydomonas ciliary I1 dynein.

Authors:  Gang Fu; Chasity Scarbrough; Kangkang Song; Nhan Phan; Maureen Wirschell; Daniela Nicastro
Journal:  FASEB J       Date:  2021-06       Impact factor: 5.834

5.  De novo identification of mammalian ciliary motility proteins using cryo-EM.

Authors:  Miao Gui; Hannah Farley; Priyanka Anujan; Jacob R Anderson; Dale W Maxwell; Jonathan B Whitchurch; J Josephine Botsch; Tao Qiu; Shimi Meleppattu; Sandeep K Singh; Qi Zhang; James Thompson; Jane S Lucas; Colin D Bingle; Dominic P Norris; Sudipto Roy; Alan Brown
Journal:  Cell       Date:  2021-10-28       Impact factor: 41.582

6.  Torque generating properties of Tetrahymena ciliary three-headed outer-arm dynein.

Authors:  Shin Yamaguchi; Masahiko Yamagishi; Junichiro Yajima
Journal:  Sci Rep       Date:  2022-10-06       Impact factor: 4.996

  6 in total

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