Literature DB >> 34302667

Guardians of the Cell: State-of-the-Art of Membrane Proteins from a Computational Point-of-View.

Nícia Rosário-Ferreira1,2, Catarina Marques-Pereira2,3, Raquel P Gouveia2, Joana Mourão4, Irina S Moreira5.   

Abstract

Membrane proteins (MPs) encompass a large family of proteins with distinct cellular functions, and although representing over 50% of existing pharmaceutical drug targets, their structural and functional information is still very scarce. Over the last years, in silico analysis and algorithm development were essential to characterize MPs and overcome some limitations of experimental approaches. The optimization and improvement of these methods remain an ongoing process, with key advances in MPs' structure, folding, and interface prediction being continuously tackled. Herein, we discuss the latest trends in computational methods toward a deeper understanding of the atomistic and mechanistic details of MPs.
© 2021. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Computational methods; Interfaces; Machine learning; Membrane proteins; Molecular dynamics; Sequence–structure–function Prediction

Mesh:

Substances:

Year:  2021        PMID: 34302667     DOI: 10.1007/978-1-0716-1468-6_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  152 in total

Review 1.  The interactions of peripheral membrane proteins with biological membranes.

Authors:  A M Whited; A Johs
Journal:  Chem Phys Lipids       Date:  2015-07-29       Impact factor: 3.329

Review 2.  Peripheral membrane proteins: Tying the knot between experiment and computation.

Authors:  Viviana Monje-Galvan; Jeffery B Klauda
Journal:  Biochim Biophys Acta       Date:  2016-02-20

3.  NMR as a tool to investigate the structure, dynamics and function of membrane proteins.

Authors:  Binyong Liang; Lukas K Tamm
Journal:  Nat Struct Mol Biol       Date:  2016-06-07       Impact factor: 15.369

Review 4.  Understanding Membrane Protein Drug Targets in Computational Perspective.

Authors:  Jianting Gong; Yongbing Chen; Feng Pu; Pingping Sun; Fei He; Li Zhang; Yanwen Li; Zhiqiang Ma; Han Wang
Journal:  Curr Drug Targets       Date:  2019       Impact factor: 3.465

Review 5.  Membrane proteins structures: A review on computational modeling tools.

Authors:  Jose G Almeida; Antonio J Preto; Panagiotis I Koukos; Alexandre M J J Bonvin; Irina S Moreira
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-07-15       Impact factor: 3.747

Review 6.  Membranes as the third genetic code.

Authors:  Okechukwu Charles Nwamba
Journal:  Mol Biol Rep       Date:  2020-04-11       Impact factor: 2.316

Review 7.  Membrane transporter research in times of countless structures.

Authors:  Markus A Seeger
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-08-31       Impact factor: 3.747

Review 8.  Drugging Membrane Protein Interactions.

Authors:  Hang Yin; Aaron D Flynn
Journal:  Annu Rev Biomed Eng       Date:  2016-02-05       Impact factor: 9.590

9.  MemBrain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction.

Authors:  Xi Yin; Jing Yang; Feng Xiao; Yang Yang; Hong-Bin Shen
Journal:  Nanomicro Lett       Date:  2017-09-27

Review 10.  Smoothing membrane protein structure determination by initial upstream stage improvements.

Authors:  Augusto Quaresma Pedro; João António Queiroz; Luís António Passarinha
Journal:  Appl Microbiol Biotechnol       Date:  2019-05-24       Impact factor: 4.813

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