Literature DB >> 26863923

Drugging Membrane Protein Interactions.

Hang Yin1,2,3, Aaron D Flynn2,4.   

Abstract

The majority of therapeutics target membrane proteins, accessible on the surface of cells, to alter cellular signaling. Cells use membrane proteins to transduce signals into cells, transport ions and molecules, bind cells to a surface or substrate, and catalyze reactions. Newly devised technologies allow us to drug conventionally "undruggable" regions of membrane proteins, enabling modulation of protein-protein, protein-lipid, and protein-nucleic acid interactions. In this review, we survey the state of the art of high-throughput screening and rational design in drug discovery, and we evaluate the advances in biological understanding and technological capacity that will drive pharmacotherapy forward against unorthodox membrane protein targets.

Entities:  

Keywords:  curvature sensing; drug discovery; high-throughput screening; rational design; transmembrane domains

Mesh:

Substances:

Year:  2016        PMID: 26863923      PMCID: PMC4968933          DOI: 10.1146/annurev-bioeng-092115-025322

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  152 in total

1.  Selection and characterization of small random transmembrane proteins that bind and activate the platelet-derived growth factor beta receptor.

Authors:  Lisa L Freeman-Cook; Ann M Dixon; Jennifer B Frank; Yu Xia; Lara Ely; Mark Gerstein; Donald M Engelman; Daniel DiMaio
Journal:  J Mol Biol       Date:  2004-05-14       Impact factor: 5.469

Review 2.  Theoretical and computational protein design.

Authors:  Ilan Samish; Christopher M MacDermaid; Jose Manuel Perez-Aguilar; Jeffery G Saven
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

3.  2D TR-NOESY experiments interrogate and rank ligand-receptor interactions in living human cancer cells.

Authors:  Silvia Mari; Chiara Invernizzi; Andrea Spitaleri; Luca Alberici; Michela Ghitti; Claudio Bordignon; Catia Traversari; Gian-Paolo Rizzardi; Giovanna Musco
Journal:  Angew Chem Int Ed Engl       Date:  2010-02-01       Impact factor: 15.336

4.  Protein targeting to exosomes/microvesicles by plasma membrane anchors.

Authors:  Beiyi Shen; Ning Wu; Jr-Ming Yang; Stephen J Gould
Journal:  J Biol Chem       Date:  2011-02-07       Impact factor: 5.157

5.  The structural basis of peptide-protein binding strategies.

Authors:  Nir London; Dana Movshovitz-Attias; Ora Schueler-Furman
Journal:  Structure       Date:  2010-02-10       Impact factor: 5.006

Review 6.  Mechanisms of membrane curvature sensing.

Authors:  Bruno Antonny
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

7.  Myristoylated alanine-rich C kinase substrate (MARCKS) sequesters spin-labeled phosphatidylinositol 4,5-bisphosphate in lipid bilayers.

Authors:  Michelle E Rauch; Colin G Ferguson; Glenn D Prestwich; David S Cafiso
Journal:  J Biol Chem       Date:  2002-02-01       Impact factor: 5.157

8.  Transmembrane glycine zippers: physiological and pathological roles in membrane proteins.

Authors:  Sanguk Kim; Tae-Joon Jeon; Amit Oberai; Duan Yang; Jacob J Schmidt; James U Bowie
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-22       Impact factor: 11.205

Review 9.  Cell signaling by receptor tyrosine kinases.

Authors:  Mark A Lemmon; Joseph Schlessinger
Journal:  Cell       Date:  2010-06-25       Impact factor: 41.582

10.  A Conserved Circular Network of Coregulated Lipids Modulates Innate Immune Responses.

Authors:  Marielle S Köberlin; Berend Snijder; Leonhard X Heinz; Christoph L Baumann; Astrid Fauster; Gregory I Vladimer; Anne-Claude Gavin; Giulio Superti-Furga
Journal:  Cell       Date:  2015-06-18       Impact factor: 41.582

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  77 in total

1.  Sample Preparation and Data Collection for Electron Crystallographic Studies on Membrane Protein Structures and Lipid-Protein Interaction.

Authors:  Ka-Yi Chan; Chloe Du Truong; Yu-Ping Poh; Po-Lin Chiu
Journal:  Methods Mol Biol       Date:  2021

2.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

Review 3.  The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.

Authors:  Rajeswari Appadurai; Vladimir N Uversky; Anand Srivastava
Journal:  J Membr Biol       Date:  2019-05-28       Impact factor: 1.843

4.  Transient Transfection and Expression of Eukaryotic Membrane Proteins in Expi293F Cells and Their Screening on a Small Scale: Application for Structural Studies.

Authors:  Ganna O Krasnoselska; Maud Dumoux; Nadisha Gamage; Harish Cheruvara; James Birch; Andrew Quigley; Raymond J Owens
Journal:  Methods Mol Biol       Date:  2021

5.  Topography design in model membranes: Where biology meets physics.

Authors:  Sarina Chand; Paul Beales; Frederik Claeyssens; Barbara Ciani
Journal:  Exp Biol Med (Maywood)       Date:  2018-10-31

6.  De novo designed transmembrane peptides activating the α5β1 integrin.

Authors:  Marco Mravic; Hailin Hu; Zhenwei Lu; Joel S Bennett; Charles R Sanders; A Wayne Orr; William F DeGrado
Journal:  Protein Eng Des Sel       Date:  2018-05-01       Impact factor: 1.650

7.  Lipid and Protein Transfer between Nanolipoprotein Particles and Supported Lipid Bilayers.

Authors:  Amanda T Dang; Wei He; Daniela B Ivey; Matthew A Coleman; Tonya L Kuhl
Journal:  Langmuir       Date:  2019-09-06       Impact factor: 3.882

8.  Expression and regulation of alarmin cytokine IL-1α in human retinal pigment epithelial cells.

Authors:  Zong-Mei Bian; Matthew G Field; Susan G Elner; Victor M Elner
Journal:  Exp Eye Res       Date:  2018-03-15       Impact factor: 3.467

9.  A Fatty Acid Oxidation-dependent Metabolic Shift Regulates the Adaptation of BRAF-mutated Melanoma to MAPK Inhibitors.

Authors:  Mitchell P Levesque; Werner J Kovacs; Andrea Aloia; Daniela Müllhaupt; Christophe D Chabbert; Tanja Eberhart; Stefanie Flückiger-Mangual; Ana Vukolic; Ossia Eichhoff; Anja Irmisch; Leila T Alexander; Ernesto Scibona; Dennie T Frederick; Benchun Miao; Tian Tian; Chaoran Cheng; Lawrence N Kwong; Zhi Wei; Ryan J Sullivan; Genevieve M Boland; Meenhard Herlyn; Keith T Flaherty; Nicola Zamboni; Reinhard Dummer; Gao Zhang; Wilhelm Krek
Journal:  Clin Cancer Res       Date:  2019-08-02       Impact factor: 12.531

Review 10.  Plasma Membrane MCC/Eisosome Domains Promote Stress Resistance in Fungi.

Authors:  Carla E Lanze; Rafael M Gandra; Jenna E Foderaro; Kara A Swenson; Lois M Douglas; James B Konopka
Journal:  Microbiol Mol Biol Rev       Date:  2020-09-16       Impact factor: 11.056

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