| Literature DB >> 34291885 |
András Gáspárdy1, Beate Berger2, Jelka Zabavnik-Piano3, Endre Kovács1, Kata Annus1, Petra Zenke1, László Sáfár4, Ákos Maróti-Agóts1.
Abstract
The consideration of the descendance is indispensable in the preservation of endangered animal breeds. The authors compared mitochondrial DNA (mtDNA) control region sequence in three descendant breeds of the extinct Zaupel sheep, firstly. Their investigation was carried out in order to prove the common origin of Waldschaf (Austria), Bovec sheep (Slovenia) and Cikta (Hungary). A total of 118 biological samples were taken from non-related representatives of the three breeds between 2015 and 2017. A newly designed primer pair was also used to amplify the segment (1180 bp) to be tested. The total number of haplotypes in the whole study population was 49. The majority of which fell into haplogroup B. The significant negative value of the Fu's Fs statistic (Fs statistic = -3.296, p = 0.013) based on haplotype frequencies demonstrated a moderate foreign gene flow. As a novel observation haplogroups C and D appeared in Cikta and Bovec sheep, respectively. The Tajima D-test value in the entire study population was -0.914 (p > 0.10), meaning that the separation of the three descendant breeds did not cause genetic drift, these are collectively in genetic equilibrium. The genetic information confirmed the common origin of the breeds known from the breed history.Entities:
Keywords: Zaupel sheep; breed preservation; founder sampling; haplotype diversity; maternal lineages
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Year: 2021 PMID: 34291885 PMCID: PMC8604133 DOI: 10.1002/vms3.585
Source DB: PubMed Journal: Vet Med Sci ISSN: 2053-1095
Sample size and number of polymorphic positions
| Parameter | Waldschaf | Bovec sheep | Cikta | Total |
|---|---|---|---|---|
| No. of individuals/sequences | 27 | 21 | 70 | 118 |
| No. of parsimony sites/mutations | 68 | 52 | 108 | 131 |
| Avg. no. of mutations per individual | 2.52 | 2.48 | 1.54 | 1.11 |
FIGURE 1The distribution of the three related breeds according to CR haplotype and haplogroup
Legend: the first two digits of the individual code refer to the breeds (Wa, Waldschaf; Bo, Bovec; and Ci, Cikta), the capital letters indicate the haplogroups, while the colours associated with the letters indicate that which individual belongs to the given haplogroup
Values of k and π according to related breeds
| Parameter | Waldschaf | Bovec sheep | Cikta |
|---|---|---|---|
| Average number of nucleotide differences, | 18.661 | 17.152 | 21.251 |
| Average nucleotide diversity, π | 15.83 * 10−3 | 14.54 * 10−3 | 18.02 * 10−3 |
Pairwise averages of k and π for the three related breeds
| Parameter | Waldschaf and Bovec sheep | Waldschaf and Cikta | Bovec sheep and Cikta |
|---|---|---|---|
| Average number of nucleotide differences, | 18.773 | 20.806 | 21.383 |
| Average nucleotide diversity, π | 15.91 * 10−3 | 17.65 * 10−3 | 18.14 * 10−3 |
| Overlapping mutations, | 43, 36% | 51, 29% | 42, 26% |
FIGURE 2Connections between sample CR haplotypes and reference CR haplogroups by median‐joining network
Legend: Waldschaf samples–light green, Bovec sheep samples–green, Cikta samples–dark green. Different white coloured spots with denomination are reference samples (A‐HM236174, B‐HM236176, C‐HM236178, D‐HM236180, E‐HM236182 Meadows et al., 2005; O. musimon Mouflon HM236184, O. ammon Argali HM236188, O.vignei Urial HM236186 Hiendleder et al., 2002)