| Literature DB >> 34272449 |
Jennifer K Frediani1,2, Joshua M Levy2,3, Anuradha Rao2,4, Leda Bassit2,5, Janet Figueroa2,4, Miriam B Vos2,4,6, Anna Wood2,4, Robert Jerris2,6,7, Mark D Gonzalez2,6,7, Beverly B Rogers2,6,7, Maud Mavigner2,4, Raymond F Schinazi2,4, Nils Schoof2,4, Jesse J Waggoner2,8,9, Russell R Kempker2,8, Paulina A Rebolledo2,8,9, Jared W O'Neal2,8, Cheryl Stone2,6, Ann Chahroudi2,4,6, Claudia R Morris2,4,6, Allie Suessmith2,4, Julie Sullivan2,4, Sarah Farmer2,10, Amanda Foster2,10, John D Roback2,7, Thanuja Ramachandra2,8, CaDeidre Washington2,8, Kristie Le2, Maria C Cordero2,4, Annette Esper2,8, Eric J Nehl2,9, Yun F Wang2,7, Erika A Tyburski2,10, Greg S Martin11,12, Wilbur A Lam13,14,15,16.
Abstract
While there has been significant progress in the development of rapid COVID-19 diagnostics, as the pandemic unfolds, new challenges have emerged, including whether these technologies can reliably detect the more infectious variants of concern and be viably deployed in non-clinical settings as "self-tests". Multidisciplinary evaluation of the Abbott BinaxNOW COVID-19 Ag Card (BinaxNOW, a widely used rapid antigen test, included limit of detection, variant detection, test performance across different age-groups, and usability with self/caregiver-administration. While BinaxNOW detected the highly infectious variants, B.1.1.7 (Alpha) first identified in the UK, B.1.351 (Beta) first identified in South Africa, P.1 (Gamma) first identified in Brazil, B.1.617.2 (Delta) first identified in India and B.1.2, a non-VOC, test sensitivity decreased with decreasing viral loads. Moreover, BinaxNOW sensitivity trended lower when devices were performed by patients/caregivers themselves compared to trained clinical staff, despite universally high usability assessments following self/caregiver-administration among different age groups. Overall, these data indicate that while BinaxNOW accurately detects the new viral variants, as rapid COVID-19 tests enter the home, their already lower sensitivities compared to RT-PCR may decrease even more due to user error.Entities:
Mesh:
Year: 2021 PMID: 34272449 PMCID: PMC8285474 DOI: 10.1038/s41598-021-94055-1
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
SARS-CoV-2 live virus limit of detection.
| Viral dilution tested | Positive results/replicates | ||||
|---|---|---|---|---|---|
| TCID50/ml | TCID50/Swab | USA-WA1/2020 | USA-CA3/2020 | Italy-INMI1 | USA-GA4/2020 |
| 7.5 × 105 | 1.5 × 104 | 3/3 | n.t | n.t | n.t |
| 7.5 × 104 | 1.5 × 103 | 5/5 | 3/3 | 3/3 | 3/3 |
| 3.8 × 104 | 7.5 × 102 | 5/5 | 3/3 | 3/3 | 3/3 |
| 1.9 × 104 | 3.6 × 102 | 0/5 | 3/3 | 2/3 | 3/3 |
| 9.4 × 103 | 1.8 × 102 | n.t | 3/3 | 0/3 | 2/3 |
| 4.7 × 103 | 9.4 × 101 | n.t | 3/3 | n.t | 0/3 |
| 2.3 × 103 | 4.5 × 101 | n.t | 0/3 | n.t | n.t |
TCID 50% tissue culture infectivity dose, n.t. not tested.
Sensitivity of BinaxNOW for four relevant VOC versus Cycle threshold (Ct) values by RT-PCR.
| Ct range of CDC N2 gene (BinaxNOW—positive/total) | ||||
|---|---|---|---|---|
| 17–20 | 20–22 | 24–27 | 29–35 | |
| B.1.1.7a | 7/7 | 6/6 | 6/6 | 0/6 |
| B.1.2a | 7/7 | 6/6 | 6/6 | 0/6 |
| B.1.1.7b | 5/5 | nd | nd | nd |
| B.1.2b | 6/6 | nd | nd | nd |
| B.1.351b | nd | nd | 2/2 | nd |
| P.1b | 2/2 | 1/1 | nd | nd |
ND not determined. aPooled inactivated clinical samples. bIndividual non-inactivated clinical samples. RNA was purified from 140 µl aliquots by using QIAamp Viral RNA kit (Qiagen) or MagMax Viral RNA Isolation Kit (Applied Biosystems) and KingFisher Apex System (ThermoFisher), and were reversed transcribed into cDNA and amplified in a one-step RT-PCR multiplex reaction with qScript XLT one-Step RT-qPCR ToughMix (QuantaBio) using nCoV N2 combined primer/probe set (Integrated DNA Technologies, IDT), and the LightCycler 480 II instrument (Roche).
VOC: results of Abbott BinaxNOW SARS-CoV-2 point-of-care antigen test against SARS-CoV-2 variants of concern (VOC), tested at the same time.
| Pango lineage | Abbott BinaxNOW results | N2 Ct (Avg) | |||
|---|---|---|---|---|---|
| Result 1 | Result 2 | Result 3 | Final Result | ||
| B.1.2 | Positive | Positive | Positive | Positive | 17.03 |
| Positive | Positive | Positive | Positive | 20.55 | |
| Negative | Negative | Negative | Negative | 24.06 | |
| B.1.1.7 | Positive | Positive | Positive | Positive | 20.36 |
| Positive | Positive | Positive | Positive | 23.66 | |
| Negative | Negative | Negative | Negative | 27.36 | |
| B.1.351 | Positive | Positive | Positive | Positive | 20.59 |
| Positive | Positive | Positive | Positive | 24.14 | |
| Negative | Negative | Negative | Negative | 27.66 | |
| P.1 | Positive | Positive | Positive | Positive | 22.80 |
| Negative | Positive | Positive | Positive | 27.01 | |
| Negative | Negative | Negative | Negative | 30.78 | |
| B.1.617.2 | Positive | Positive | Positive | Positive | 19.60 |
| Positive | Positive | Positive | Positive | 22.09 | |
| Negative | Negative | Negative | Negative | 25.60 | |
Figure 1Concordance of LFA and RT-PCR results. Qualitative results from the 3 LFA assays: BD, Sofia and BinaxNOW were compared to the RT-PCR results based on the Ct values. Ct values were divided in 4 groups and displayed on the x-axis. The total number of samples tested as positive by each LFA assay is displayed at the top of the graph, with the total number of samples tested underneath. Percent (%) positive agreement of each LFA assay to the RT-PCR assay is represented on the y-axis.
Figure 2BinaxNOW agreement versus gold standard PCR decreases with rising Ct values and self collected samples. (A) Collection of diagnostic samples from the anterior nares was completed by either trained healthcare workers (blue) or individual participants (red). Results of quantitative RT-PCR are presented as Ct scores and used to stratify the presented data. % Agreement was calculated as the percentage of concordant test results per group. (B) Pictures of BinaxNOW results for positive and negative findings.
Figure 3Evaluation for the independent use of BinaxNOW. Usability assessment following self-administration, with parent/caregiver (n = 17) or oneself (adolescent) (n = 3) and adult self-collected sample (n = 42). Self-collection reflects confidence in sample collection. Self-administration reflects confidence in completing assay (assay development, interpretation, etc.).