Literature DB >> 34241191

Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIα liquid-liquid phase separation.

Surl-Hee Ahn1, Sanbo Qin2, Jason Z Zhang3, J Andrew McCammon1, Jin Zhang3, Huan-Xiang Zhou2.   

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Year:  2021        PMID： 34241191      PMCID： PMC8189721          DOI： 10.1063/5.0049810

Source DB:  PubMed          Journal:  J Chem Phys        ISSN： 0021-9606            Impact factor:   4.304


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  9 in total

1.  PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.

Authors:  Todd J Dolinsky; Jens E Nielsen; J Andrew McCammon; Nathan A Baker
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Fast Method for Computing Chemical Potentials and Liquid-Liquid Phase Equilibria of Macromolecular Solutions.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Phys Chem B       Date:  2016-07-05       Impact factor: 2.991

3.  Three archetypical classes of macromolecular regulators of protein liquid-liquid phase separation.

Authors:  Archishman Ghosh; Konstantinos Mazarakos; Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

4.  Crystal structure of a complex between the catalytic and regulatory (RIalpha) subunits of PKA.

Authors:  Choel Kim; Nguyen-Huu Xuong; Susan S Taylor
Journal:  Science       Date:  2005-02-04       Impact factor: 47.728

5.  Calculation of Second Virial Coefficients of Atomistic Proteins Using Fast Fourier Transform.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Phys Chem B       Date:  2019-09-19       Impact factor: 2.991

6.  An FFT-based method for modeling protein folding and binding under crowding: benchmarking on ellipsoidal and all-atom crowders.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Chem Theory Comput       Date:  2013-10-01       Impact factor: 6.006

7.  Phase Separation of a PKA Regulatory Subunit Controls cAMP Compartmentation and Oncogenic Signaling.

Authors:  Jason Z Zhang; Tsan-Wen Lu; Lucas M Stolerman; Brian Tenner; Jessica R Yang; Jin-Fan Zhang; Martin Falcke; Padmini Rangamani; Susan S Taylor; Sohum Mehta; Jin Zhang
Journal:  Cell       Date:  2020-08-25       Impact factor: 41.582

8.  R.E.D. Server: a web service for deriving RESP and ESP charges and building force field libraries for new molecules and molecular fragments.

Authors:  Enguerran Vanquelef; Sabrina Simon; Gaelle Marquant; Elodie Garcia; Geoffroy Klimerak; Jean Charles Delepine; Piotr Cieplak; François-Yves Dupradeau
Journal:  Nucleic Acids Res       Date:  2011-05-23       Impact factor: 16.971

9.  Further Development of the FFT-based Method for Atomistic Modeling of Protein Folding and Binding under Crowding: Optimization of Accuracy and Speed.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Chem Theory Comput       Date:  2014-05-06       Impact factor: 6.006
  9 in total
  2 in total

1.  Calculating Binodals and Interfacial Tension of Phase-Separated Condensates from Molecular Simulations with Finite-Size Corrections.

Authors:  Konstantinos Mazarakos; Sanbo Qin; Huan-Xiang Zhou
Journal:  Methods Mol Biol       Date:  2023

2.  Preferential Interactions of a Crowder Protein with the Specific Binding Site of a Native Protein Complex.

Authors:  Xu Dong; Ling-Yun Qin; Zhou Gong; Sanbo Qin; Huan-Xiang Zhou; Chun Tang
Journal:  J Phys Chem Lett       Date:  2022-01-19       Impact factor: 6.475
  2 in total

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