Literature DB >> 34235438

The International Workshop on Osteoarthritis Imaging Knee MRI Segmentation Challenge: A Multi-Institute Evaluation and Analysis Framework on a Standardized Dataset.

Arjun D Desai1, Francesco Caliva1, Claudia Iriondo1, Aliasghar Mortazi1, Sachin Jambawalikar1, Ulas Bagci1, Mathias Perslev1, Christian Igel1, Erik B Dam1, Sibaji Gaj1, Mingrui Yang1, Xiaojuan Li1, Cem M Deniz1, Vladimir Juras1, Ravinder Regatte1, Garry E Gold1, Brian A Hargreaves1, Valentina Pedoia1, Akshay S Chaudhari1.   

Abstract

PURPOSE: To organize a multi-institute knee MRI segmentation challenge for characterizing the semantic and clinical efficacy of automatic segmentation methods relevant for monitoring osteoarthritis progression.
MATERIALS AND METHODS: A dataset partition consisting of three-dimensional knee MRI from 88 retrospective patients at two time points (baseline and 1-year follow-up) with ground truth articular (femoral, tibial, and patellar) cartilage and meniscus segmentations was standardized. Challenge submissions and a majority-vote ensemble were evaluated against ground truth segmentations using Dice score, average symmetric surface distance, volumetric overlap error, and coefficient of variation on a holdout test set. Similarities in automated segmentations were measured using pairwise Dice coefficient correlations. Articular cartilage thickness was computed longitudinally and with scans. Correlation between thickness error and segmentation metrics was measured using the Pearson correlation coefficient. Two empirical upper bounds for ensemble performance were computed using combinations of model outputs that consolidated true positives and true negatives.
RESULTS: Six teams (T 1-T 6) submitted entries for the challenge. No differences were observed across any segmentation metrics for any tissues (P = .99) among the four top-performing networks (T 2, T 3, T 4, T 6). Dice coefficient correlations between network pairs were high (> 0.85). Per-scan thickness errors were negligible among networks T 1-T 4 (P = .99), and longitudinal changes showed minimal bias (< 0.03 mm). Low correlations (ρ < 0.41) were observed between segmentation metrics and thickness error. The majority-vote ensemble was comparable to top-performing networks (P = .99). Empirical upper-bound performances were similar for both combinations (P = .99).
CONCLUSION: Diverse networks learned to segment the knee similarly, where high segmentation accuracy did not correlate with cartilage thickness accuracy and voting ensembles did not exceed individual network performance.See also the commentary by Elhalawani and Mak in this issue.Keywords: Cartilage, Knee, MR-Imaging, Segmentation © RSNA, 2020Supplemental material is available for this article. 2021 by the Radiological Society of North America, Inc.

Entities:  

Year:  2021        PMID: 34235438      PMCID: PMC8231759          DOI: 10.1148/ryai.2021200078

Source DB:  PubMed          Journal:  Radiol Artif Intell        ISSN: 2638-6100


  22 in total

1.  Radiological assessment of osteo-arthrosis.

Authors:  J H KELLGREN; J S LAWRENCE
Journal:  Ann Rheum Dis       Date:  1957-12       Impact factor: 19.103

2.  Quantitative measures of meniscus extrusion predict incident radiographic knee osteoarthritis--data from the Osteoarthritis Initiative.

Authors:  K Emmanuel; E Quinn; J Niu; A Guermazi; F Roemer; W Wirth; F Eckstein; D Felson
Journal:  Osteoarthritis Cartilage       Date:  2015-08-28       Impact factor: 6.576

3.  The global burden of hip and knee osteoarthritis: estimates from the global burden of disease 2010 study.

Authors:  Marita Cross; Emma Smith; Damian Hoy; Sandra Nolte; Ilana Ackerman; Marlene Fransen; Lisa Bridgett; Sean Williams; Francis Guillemin; Catherine L Hill; Laura L Laslett; Graeme Jones; Flavia Cicuttini; Richard Osborne; Theo Vos; Rachelle Buchbinder; Anthony Woolf; Lyn March
Journal:  Ann Rheum Dis       Date:  2014-02-19       Impact factor: 19.103

4.  Automated cartilage and meniscus segmentation of knee MRI with conditional generative adversarial networks.

Authors:  Sibaji Gaj; Mingrui Yang; Kunio Nakamura; Xiaojuan Li
Journal:  Magn Reson Med       Date:  2019-12-02       Impact factor: 4.668

5.  Utility of deep learning super-resolution in the context of osteoarthritis MRI biomarkers.

Authors:  Akshay S Chaudhari; Kathryn J Stevens; Jeff P Wood; Amit K Chakraborty; Eric K Gibbons; Zhongnan Fang; Arjun D Desai; Jin Hyung Lee; Garry E Gold; Brian A Hargreaves
Journal:  J Magn Reson Imaging       Date:  2019-07-16       Impact factor: 4.813

Review 6.  The osteoarthritis initiative: report on the design rationale for the magnetic resonance imaging protocol for the knee.

Authors:  C G Peterfy; E Schneider; M Nevitt
Journal:  Osteoarthritis Cartilage       Date:  2008-09-10       Impact factor: 6.576

7.  Improving Automated Pediatric Bone Age Estimation Using Ensembles of Models from the 2017 RSNA Machine Learning Challenge.

Authors:  Ian Pan; Hans Henrik Thodberg; Safwan S Halabi; Jayashree Kalpathy-Cramer; David B Larson
Journal:  Radiol Artif Intell       Date:  2019-11-20

Review 8.  Prospective Deployment of Deep Learning in MRI: A Framework for Important Considerations, Challenges, and Recommendations for Best Practices.

Authors:  Akshay S Chaudhari; Christopher M Sandino; Elizabeth K Cole; David B Larson; Garry E Gold; Shreyas S Vasanawala; Matthew P Lungren; Brian A Hargreaves; Curtis P Langlotz
Journal:  J Magn Reson Imaging       Date:  2020-08-24       Impact factor: 5.119

Review 9.  SciPy 1.0: fundamental algorithms for scientific computing in Python.

Authors:  Pauli Virtanen; Ralf Gommers; Travis E Oliphant; Matt Haberland; Tyler Reddy; David Cournapeau; Evgeni Burovski; Pearu Peterson; Warren Weckesser; Jonathan Bright; Stéfan J van der Walt; Matthew Brett; Joshua Wilson; K Jarrod Millman; Nikolay Mayorov; Andrew R J Nelson; Eric Jones; Robert Kern; Eric Larson; C J Carey; İlhan Polat; Yu Feng; Eric W Moore; Jake VanderPlas; Denis Laxalde; Josef Perktold; Robert Cimrman; Ian Henriksen; E A Quintero; Charles R Harris; Anne M Archibald; Antônio H Ribeiro; Fabian Pedregosa; Paul van Mulbregt
Journal:  Nat Methods       Date:  2020-02-03       Impact factor: 28.547

Review 10.  Rapid Knee MRI Acquisition and Analysis Techniques for Imaging Osteoarthritis.

Authors:  Akshay S Chaudhari; Feliks Kogan; Valentina Pedoia; Sharmila Majumdar; Garry E Gold; Brian A Hargreaves
Journal:  J Magn Reson Imaging       Date:  2019-11-21       Impact factor: 4.813

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  8 in total

Review 1.  Studying osteoarthritis with artificial intelligence applied to magnetic resonance imaging.

Authors:  Francesco Calivà; Nikan K Namiri; Maureen Dubreuil; Valentina Pedoia; Eugene Ozhinsky; Sharmila Majumdar
Journal:  Nat Rev Rheumatol       Date:  2021-11-30       Impact factor: 20.543

Review 2.  Challenges in ensuring the generalizability of image quantitation methods for MRI.

Authors:  Kathryn E Keenan; Jana G Delfino; Kalina V Jordanova; Megan E Poorman; Prathyush Chirra; Akshay S Chaudhari; Bettina Baessler; Jessica Winfield; Satish E Viswanath; Nandita M deSouza
Journal:  Med Phys       Date:  2021-09-29       Impact factor: 4.506

3.  Cross-Cohort Automatic Knee MRI Segmentation With Multi-Planar U-Nets.

Authors:  Mathias Perslev; Akshay Pai; Jos Runhaar; Christian Igel; Erik B Dam
Journal:  J Magn Reson Imaging       Date:  2021-12-17       Impact factor: 5.119

4.  Validating a Semi-Automated Technique for Segmenting Femoral Articular Cartilage on Ultrasound Images.

Authors:  Matthew S Harkey; Nicholas Michel; Christopher Kuenze; Ryan Fajardo; Matt Salzler; Jeffrey B Driban; Ilker Hacihaliloglu
Journal:  Cartilage       Date:  2022 Apr-Jun       Impact factor: 3.117

Review 5.  Prospective Deployment of Deep Learning in MRI: A Framework for Important Considerations, Challenges, and Recommendations for Best Practices.

Authors:  Akshay S Chaudhari; Christopher M Sandino; Elizabeth K Cole; David B Larson; Garry E Gold; Shreyas S Vasanawala; Matthew P Lungren; Brian A Hargreaves; Curtis P Langlotz
Journal:  J Magn Reson Imaging       Date:  2020-08-24       Impact factor: 5.119

6.  Clinical validation of the use of prototype software for automatic cartilage segmentation to quantify knee cartilage in volunteers.

Authors:  Ping Zhang; Ran Xu Zhang; Xiao Shuai Chen; Xiao Yue Zhou; Esther Raithel; Jian Ling Cui; Jian Zhao
Journal:  BMC Musculoskelet Disord       Date:  2022-01-03       Impact factor: 2.362

7.  Automated segmentation of articular disc of the temporomandibular joint on magnetic resonance images using deep learning.

Authors:  Shota Ito; Yuichi Mine; Yuki Yoshimi; Saori Takeda; Akari Tanaka; Azusa Onishi; Tzu-Yu Peng; Takashi Nakamoto; Toshikazu Nagasaki; Naoya Kakimoto; Takeshi Murayama; Kotaro Tanimoto
Journal:  Sci Rep       Date:  2022-01-07       Impact factor: 4.379

8.  Utilization of Mid-Thigh Magnetic Resonance Imaging to Predict Lean Body Mass and Knee Extensor Strength in Obese Adults.

Authors:  Stephan G Bodkin; Andrew C Smith; Bryan C Bergman; Donglai Huo; Kenneth A Weber; Simona Zarini; Darcy Kahn; Amanda Garfield; Emily Macias; Michael O Harris-Love
Journal:  Front Rehabil Sci       Date:  2022-03-24
  8 in total

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