| Literature DB >> 34233675 |
Zaoqu Liu1,2,3, Taoyuan Lu4, Jing Li1,2,3, Libo Wang5, Kaihao Xu1, Qin Dang6, Chunguang Guo7, Long Liu5, Dechao Jiao1, Zhenqiang Sun8, Xinwei Han9,10,11.
Abstract
BACKGROUND: A large number of patients with stage II/III colorectal cancer (CRC) have a high recurrence rate after radical resection. We aimed to develop a novel tool to stratify patients with different recurrence-risk for optimizing decision-making in post-operative surveillance and therapeutic regimens.Entities:
Keywords: Adjuvant chemotherapy; Gene signature; LASSO; Recurrence; Stage II/III colorectal cancer
Year: 2021 PMID: 34233675 PMCID: PMC8265123 DOI: 10.1186/s12935-021-02070-z
Source DB: PubMed Journal: Cancer Cell Int ISSN: 1475-2867 Impact factor: 5.722
Fig. 1The flowchart of this study
Fig. 2The development of the CRRS model based on the LASSO algorithm. A Ten-fold cross-validations to tune the parameter selection in the LASSO model. The two dotted vertical lines are drawn at the optimal values by minimum criteria (left) and 1 − SE (standard error) criteria (right). B LASSO coefficient profiles of the candidate genes for CRRS construction. C The distribution of risk score, recurrence status, and gene expression panel in four cohort
Fig. 3Kaplan–Meier survival analysis of CRRS in four cohorts. Kaplan–Meier curves of RFS according to the CRRS in GSE143985 (A), GSE17536 (B), GSE29621 (C), and GSE92921 (D)
Univariate and multivariate Cox regression analysis of the risk score
| Characteristics | Univariate Cox analysis | Multivariate Cox analysis | ||
|---|---|---|---|---|
| HR (95%CI) | HR (95%CI) | |||
| GSE143985 | ||||
| Stage (III vs II) | 4.058 (1.272–12.943) | 0.018 | 6.876 (1.276–37.041) | 0.025 |
| ACT (Y vs N) | 2.144 (0.743–6.186) | 0.158 | 0.989 (0.210–4.649) | 0.989 |
| TP53 (Mut vs Wt) | 0.400 (0.134–1.195) | 0.101 | 1.058 (0.270–4.152) | 0.935 |
| KRAS (Mut vs Wt) | 3.182 (1.065–9.510) | 0.038 | 2.289 (0.571–9.185) | 0.243 |
| Risk score | 4.296 (2.612–7.065) | < 0.001 | 5.128 (2.662–9.880) | < 0.001 |
| GSE17536 | ||||
| Stage (III vs II) | 1.964 (0.941–4.099) | 0.072 | 0.967 (0.402–2.326) | 0.142 |
| Age (> 60 vs ≤ 60) | 0.482 (0.238–0.978) | 0.043 | 0.728 (0.308–1.721) | 0.009 |
| Sex (Male vs Female) | 1.138 (0.562–2.304) | 0.720 | 3.155 (1.196–8.321) | 0.370 |
| Risk score | 2.354 (1.662–3.334) | < 0.001 | 2.527 (1.720–3.705) | < 0.001 |
| GSE29621 | ||||
| Stage (III vs II) | 2.785 (0.525–14.774) | 0.229 | 0.886 (0.093–8.072) | 0.900 |
| Age (> 60 vs ≤ 60) | 1.083 (0.242–4.849) | 0.917 | 0.888 (0.095–8.253) | 0.917 |
| ACT (Y vs N) | 1.628 (0.311–8.531) | 0.564 | 5.698 (0.323–100.67) | 0.235 |
| Risk score | 3.934 (1.622–9.539) | 0.002 | 5.150 (1.558–17.030) | 0.007 |
| GSE92921 | ||||
| Stage (III vs II) | 6.229 (1.140–34.035) | 0.035 | 3.706 (0.585–23.486) | 0.164 |
| TP53 (Mut vs Wt) | 1.453 (0.266–7.932) | 0.666 | 1.050 (0.165–6.677) | 0.959 |
| KRAS (Mut vs Wt) | 3.217 (0.589–17.580) | 0.177 | 2.720 (0.280–26.448) | 0.389 |
| Risk score | 7.080 (2.011–24.924) | 0.002 | 6.311 (1.691–23.562) | 0.006 |
Fig. 4Evaluation of the CRRS model in four cohorts. A Time-dependent ROC analysis for predicting RFS at 1 ~ 5 years. B The Harrell’s C-index of CRRS. C Calibration plots for comparing the actual probabilities and the predicted probabilities of RFS at 1 ~ 5 years. D Comparison of recurrence rate between the high-risk and low-risk groups. E ROC analysis of the CRRS model for predicting the recurrence event of patients
Fig. 5Validation of our discovery in a clinical in-house cohort. A Kaplan–Meier curves of RFS according to the CRRS. B Univariate and multivariate Cox regression analysis of the risk score. C Time-dependent ROC analysis for predicting RFS at 1–5 years. D Calibration plots for comparing the actual probabilities and the predicted probabilities of RFS at 1–5 years