Literature DB >> 15066857

Comparisons of protocols for decontamination of environmental ice samples for biological and molecular examinations.

S O Rogers1, V Theraisnathan, L J Ma, Y Zhao, G Zhang, S-G Shin, J D Castello, W T Starmer.   

Abstract

Drilling and laboratory manipulations of glacial ice cores introduce contemporary microbes and biomolecules onto the cores. We report herein a systematic comparative study of several decontamination protocols. Only treatment with 5% sodium hypochlorite eliminated all external contaminating microbes and nucleic acids while maintaining the integrity of those within the cores.

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Year:  2004        PMID： 15066857      PMCID： PMC383132          DOI： 10.1128/AEM.70.4.2540-2544.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  5 in total

1.  Geomicrobiology of subglacial ice above Lake Vostok, Antarctica.

Authors:  J C Priscu; E E Adams; W B Lyons; M A Voytek; D W Mogk; R L Brown; C P McKay; C D Takacs; K A Welch; C F Wolf; J D Kirshtein; R Avci
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

2.  Microorganisms in the accreted ice of Lake Vostok, Antarctica.

Authors:  D M Karl; D F Bird; K Björkman; T Houlihan; R Shackelford; L Tupas
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

3.  Isolation of bacteria and 16S rDNAs from Lake Vostok accretion ice.

Authors:  B C Christner; E Mosley-Thompson; L G Thompson; J N Reeve
Journal:  Environ Microbiol       Date:  2001-09       Impact factor: 5.491

4.  Diverse plant and animal genetic records from Holocene and Pleistocene sediments.

Authors:  Eske Willerslev; Anders J Hansen; Jonas Binladen; Tina B Brand; M Thomas P Gilbert; Beth Shapiro; Michael Bunce; Carsten Wiuf; David A Gilichinsky; Alan Cooper
Journal:  Science       Date:  2003-04-17       Impact factor: 47.728

5.  Characterization of viable bacteria from Siberian permafrost by 16S rDNA sequencing.

Authors:  T Shi; R H Reeves; D A Gilichinsky; E I Friedmann
Journal:  Microb Ecol       Date:  1997 May-Jun       Impact factor: 4.552
  5 in total
  20 in total

1.  Utilization of fluorescent microspheres and a green fluorescent protein-marked strain for assessment of microbiological contamination of permafrost and ground ice core samples from the Canadian High Arctic.

Authors:  D F Juck; G Whissell; B Steven; W Pollard; C P McKay; C W Greer; L G Whyte
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

2.  Fossil genes and microbes in the oldest ice on earth.

Authors:  Kay D Bidle; Sanghoon Lee; David R Marchant; Paul G Falkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-08       Impact factor: 11.205

3.  Isolation of microbes from Lake Vostok accretion ice.

Authors:  Tom D'Elia; Ram Veerapaneni; Scott O Rogers
Journal:  Appl Environ Microbiol       Date:  2008-06-13       Impact factor: 4.792

4.  Evidence of influenza a virus RNA in siberian lake ice.

Authors:  Gang Zhang; Dany Shoham; David Gilichinsky; Sergei Davydov; John D Castello; Scott O Rogers
Journal:  J Virol       Date:  2006-10-11       Impact factor: 5.103

5.  Validation of a Clostridium endospore viability assay and analysis of Greenland ices and Atacama Desert soils.

Authors:  Wan-Wan Yang; Adrian Ponce
Journal:  Appl Environ Microbiol       Date:  2011-02-04       Impact factor: 4.792

6.  Applications of a rapid endospore viability assay for monitoring UV inactivation and characterizing arctic ice cores.

Authors:  Hannah S Shafaat; Adrian Ponce
Journal:  Appl Environ Microbiol       Date:  2006-10       Impact factor: 4.792

Review 7.  Ancient and modern environmental DNA.

Authors:  Mikkel Winther Pedersen; Søren Overballe-Petersen; Luca Ermini; Clio Der Sarkissian; James Haile; Micaela Hellstrom; Johan Spens; Philip Francis Thomsen; Kristine Bohmann; Enrico Cappellini; Ida Bærholm Schnell; Nathan A Wales; Christian Carøe; Paula F Campos; Astrid M Z Schmidt; M Thomas P Gilbert; Anders J Hansen; Ludovic Orlando; Eske Willerslev
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

8.  Fungi in glacial ice of Antarctica: diversity, distribution and bioprospecting of bioactive compounds.

Authors:  Graciéle Cunha Alves de Menezes; Bárbara Alves Porto; Soraya Sander Amorim; Carlos Leomar Zani; Tânia Maria de Almeida Alves; Policarpo Ademar Sales Junior; Silvane Maria Fonseca Murta; Jefferson Cardia Simões; Betania Barros Cota; Carlos Augusto Rosa; Luiz Henrique Rosa
Journal:  Extremophiles       Date:  2020-03-10       Impact factor: 2.395

9.  Fungi in the Antarctic Cryosphere: Using DNA Metabarcoding to Reveal Fungal Diversity in Glacial Ice from the Antarctic Peninsula Region.

Authors:  Graciéle Cunha Alves de Menezes; Paulo E A S Câmara; Otávio Henrique Bezerra Pinto; Peter Convey; Micheline Carvalho-Silva; Jefferson Cardia Simões; Carlos Augusto Rosa; Luiz Henrique Rosa
Journal:  Microb Ecol       Date:  2021-07-06       Impact factor: 4.552

10.  Modern subsurface bacteria in pristine 2.7 Ga-old fossil stromatolite drillcore samples from the Fortescue Group, Western Australia.

Authors:  Emmanuelle Gérard; David Moreira; Pascal Philippot; Martin J Van Kranendonk; Purificación López-García
Journal:  PLoS One       Date:  2009-04-27       Impact factor: 3.240
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