| Literature DB >> 34206795 |
Sebastián A Cuesta1,2, F Javier Torres1,2, Luis Rincón1,2, José Luis Paz3, Edgar A Márquez4, José R Mora1,2.
Abstract
In this study, the degradation mechanism of chloroacetanilide herbicides in the presence of four different nucleophiles, namely: Br-, I-, HS-, and S2O3-2, was theoretically evaluated using the dispersion-corrected hybrid functional wB97XD and the DGDZVP as a basis set. The comparison of computed activation energies with experimental data shows an excellent correlation (R2 = 0.98 for alachlor and 0.97 for propachlor). The results suggest that the best nucleophiles are those where a sulfur atom performs the nucleophilic attack, whereas the other species are less reactive. Furthermore, it was observed that the different R groups of chloroacetanilide herbicides have a negligible effect on the activation energy of the process. Further insights into the mechanism show that geometrical changes and electronic rearrangements contribute 60% and 40% of the activation energy, respectively. A deeper analysis of the reaction coordinate was conducted, employing the evolution chemical potential, hardness, and electrophilicity index, as well as the electronic flux. The charge analysis shows that the electron density of chlorine increases as the nucleophilic attack occurs. Finally, NBO analysis indicates that the nucleophilic substitution in chloroacetanilides is an asynchronous process with a late transition state for all models except for the case of the iodide attack, which occurs through an early transition state in the reaction.Entities:
Keywords: DFT calculations; chloroacetanilide herbicides; electronic flux; nucleophilic substitution; reaction force
Mesh:
Substances:
Year: 2021 PMID: 34206795 PMCID: PMC8268095 DOI: 10.3390/ijms22136876
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Scheme 1SN2 reaction mechanism of chloroacetanilides.
Figure 1Solvation electronic energy of bromide (a), iodide (b), bisulfide (c), and thiosulfate (d) ions using a different number of water molecules.
Activation free energy in kcal/mol of the SN2 reaction of chloroacetanilides in water.
| Nucleophile | Acetochlor | Alachlor | Metolachlor | Propachlor |
|---|---|---|---|---|
|
| 23.81 | 23.84 | 22.98 | 22.18 |
|
| 21.80 | 22.04 | 22.53 | 21.22 |
|
| 20.45 | 19.33 | 20.25 | 18.36 |
|
| 18.73 | 20.08 | 20.29 | 19.09 |
|
| 26.28 | 26.37 | 26.77 | 26.68 |
Figure 2Log knuc vs. activation free energy for alachlor and propachlor. R2 = coefficient of determination, y = activation free energy, x = log knuc.
Figure 3IRC and RF plots for the nucleophilic substitution of alachlor (a,b) and propachlor (c,d).
Figure 4Reaction force works for the nucleophilic substitution reaction of alachlor (a) and propachlor (b).
Figure 5µ, η, and ω zoomed plots for the nucleophilic substitution of alachlor (a) and propachlor (b).
Figure 6REF plots for the nucleophilic substitution of alachlor (a) and propachlor (b).
Figure 7Charge change from reagent to the transition state (R-TS), and from the reagent to the product (R-P) for the nucleophilic attack of alachlor (a) and propachlor (b).
Average evolution percentage (%Evav) and synchronicity (Sy) for the nucleophilic substitution of alachlor and propachlor.
| System | Br− | I− | HS− | S2O3−2 (S) | S2O3−2 (S) | |
|---|---|---|---|---|---|---|
|
|
| 49.1 | 56.8 | 40.8 | 45.0 | 45.8 |
|
| 0.904 | 0.928 | 0.899 | 0.892 | 0.839 | |
|
|
| 49.2 | 56.4 | 41.2 | 46.4 | 46.5 |
|
| 0.903 | 0.917 | 0.895 | 0.892 | 0.833 |
Figure 8Schematic representation of the solvation model approach used in this work.
Figure 9Potential energy profile (a) and reaction force profile (b) for a single step reaction along the IRC.