Literature DB >> 17984973

A unified classification system for eukaryotic transposable elements.

Thomas Wicker1, François Sabot, Aurélie Hua-Van, Jeffrey L Bennetzen, Pierre Capy, Boulos Chalhoub, Andrew Flavell, Philippe Leroy, Michele Morgante, Olivier Panaud, Etienne Paux, Phillip SanMiguel, Alan H Schulman.   

Abstract

Our knowledge of the structure and composition of genomes is rapidly progressing in pace with their sequencing. The emerging data show that a significant portion of eukaryotic genomes is composed of transposable elements (TEs). Given the abundance and diversity of TEs and the speed at which large quantities of sequence data are emerging, identification and annotation of TEs presents a significant challenge. Here we propose the first unified hierarchical classification system, designed on the basis of the transposition mechanism, sequence similarities and structural relationships, that can be easily applied by non-experts. The system and nomenclature is kept up to date at the WikiPoson web site.

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Year:  2007        PMID: 17984973     DOI: 10.1038/nrg2165

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  1043 in total

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Authors:  Bianca O Carmello; Rafael L B Coan; Adauto L Cardoso; Erica Ramos; Bruno E A Fantinatti; Diego F Marques; Rogério A Oliveira; Guilherme T Valente; Cesar Martins
Journal:  Chromosome Res       Date:  2017-08-03       Impact factor: 5.239

2.  Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum.

Authors:  Rosalía Cristina Paz; Melisa Eliana Kozaczek; Hernán Guillermo Rosli; Natalia Pilar Andino; Maria Virginia Sanchez-Puerta
Journal:  Genetica       Date:  2017-08-03       Impact factor: 1.082

3.  Analysis of copy-number variation, insertional polymorphism, and methylation status of the tiniest class I (TRIM) and class II (MITE) transposable element families in various rice strains.

Authors:  Omer Baruch; Khalil Kashkush
Journal:  Plant Cell Rep       Date:  2011-12-20       Impact factor: 4.570

4.  Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A-B genome divergence.

Authors:  Stephan Nielen; Bruna S Vidigal; Soraya C M Leal-Bertioli; Milind Ratnaparkhe; Andrew H Paterson; Olivier Garsmeur; Angélique D'Hont; Patricia M Guimarães; David J Bertioli
Journal:  Mol Genet Genomics       Date:  2011-11-27       Impact factor: 3.291

5.  Marker utility of miniature inverted-repeat transposable elements for wheat biodiversity and evolution.

Authors:  Beery Yaakov; Elif Ceylan; Katherine Domb; Khalil Kashkush
Journal:  Theor Appl Genet       Date:  2012-05       Impact factor: 5.699

6.  The role of vertical and horizontal transfer in the evolution of Paris-like elements in drosophilid species.

Authors:  Gabriel Luz Wallau; Valéria Lima Kaminski; Elgion L S Loreto
Journal:  Genetica       Date:  2012-04-24       Impact factor: 1.082

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Authors:  Caihua Gao; Meili Xiao; Lingyan Jiang; Jiana Li; Jiaming Yin; Xiaodong Ren; Wei Qian; Ortegón Oscar; Donghui Fu; Zhanglin Tang
Journal:  Mol Biol Rep       Date:  2012-02-11       Impact factor: 2.316

Review 8.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

9.  Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses.

Authors:  Fabíola Carvalho Santos; Romain Guyot; Cacilda Borges do Valle; Lucimara Chiari; Vânia Helena Techio; Pat Heslop-Harrison; André Luís Laforga Vanzela
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

10.  Cytological variations and long terminal repeat (LTR) retrotransposon diversities among diploids and B-chromosome aneuploids in Lilium amabile Palibin.

Authors:  Sung-Il Lee; Truong Xuan Nguyen; Jong-Hwa Kim; Nam-Soo Kim
Journal:  Genes Genomics       Date:  2019-05-03       Impact factor: 1.839

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