Literature DB >> 34188618

lamaGOET: an interface for quantum crystallography.

Lorraine A Malaspina1,2, Alessandro Genoni3, Simon Grabowsky1,2.   

Abstract

In quantum crystallography, theoretical calculations and crystallographic refinements are closely intertwined. This means that the employed software must be able to perform both quantum-mechanical calculations and crystallographic least-squares refinements. So far, the program Tonto is the only one able to do that. The lamaGOET interface described herein deals with this issue since it interfaces dedicated quantum-chemical software (the widely used Gaussian package and the specialized ELMOdb program) with the refinement capabilities of Tonto. Three different flavours of quantum-crystallographic refinements of the dipetide glycyl-l-threonine dihydrate are presented to showcase the capabilities of lamaGOET: Hirshfeld atom refinement (HAR), HAR-ELMO, namely HAR coupled with extremely localized molecular orbitals, and X-ray constrained wavefunction fitting. © Lorraine A. Malaspina et al. 2021.

Entities:  

Keywords:  Hirshfeld atom refinement; X-ray constrained wavefunction fitting; quantum crystallography

Year:  2021        PMID: 34188618      PMCID: PMC8202027          DOI: 10.1107/S1600576721002545

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  36 in total

Review 1.  Chemical applications of X-ray charge-density analysis.

Authors:  T S Koritsanszky; P Coppens
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Libraries of Extremely Localized Molecular Orbitals. 2. Comparison with the Pseudoatoms Transferability.

Authors:  Benjamin Meyer; Benoît Guillot; Manuel F Ruiz-Lopez; Christian Jelsch; Alessandro Genoni
Journal:  J Chem Theory Comput       Date:  2016-02-04       Impact factor: 6.006

3.  Libraries of Extremely Localized Molecular Orbitals. 1. Model Molecules Approximation and Molecular Orbitals Transferability.

Authors:  Benjamin Meyer; Benoît Guillot; Manuel F Ruiz-Lopez; Alessandro Genoni
Journal:  J Chem Theory Comput       Date:  2016-02-04       Impact factor: 6.006

4.  Importance of Relativistic Effects and Electron Correlation in Structure Factors and Electron Density of Diphenyl Mercury and Triphenyl Bismuth.

Authors:  Lukáš Bučinský; Dylan Jayatilaka; Simon Grabowsky
Journal:  J Phys Chem A       Date:  2016-08-16       Impact factor: 2.781

Review 5.  Charge densities come of age.

Authors:  Philip Coppens
Journal:  Angew Chem Int Ed Engl       Date:  2005-10-28       Impact factor: 15.336

6.  Modeling electron density distributions from X-ray diffraction to derive optical properties: constrained wavefunction versus multipole refinement.

Authors:  Daniel D Hickstein; Jacqueline M Cole; Michael J Turner; Dylan Jayatilaka
Journal:  J Chem Phys       Date:  2013-08-14       Impact factor: 3.488

7.  Density functional theory is straying from the path toward the exact functional.

Authors:  Michael G Medvedev; Ivan S Bushmarinov; Jianwei Sun; John P Perdew; Konstantin A Lyssenko
Journal:  Science       Date:  2017-01-06       Impact factor: 47.728

8.  Verification of structural and electrostatic properties obtained by the use of different pseudoatom databases.

Authors:  Joanna Maria Bąk; Sławomir Domagała; Christian Hübschle; Christian Jelsch; Birger Dittrich; Paulina Maria Dominiak
Journal:  Acta Crystallogr A       Date:  2011-01-26       Impact factor: 2.290

9.  Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2.

Authors:  Malte Fugel; Dylan Jayatilaka; Emanuel Hupf; Jacob Overgaard; Venkatesha R Hathwar; Piero Macchi; Michael J Turner; Judith A K Howard; Oleg V Dolomanov; Horst Puschmann; Bo B Iversen; Hans-Beat Bürgi; Simon Grabowsky
Journal:  IUCrJ       Date:  2018-01-01       Impact factor: 4.769

10.  Similarities and Differences between Crystal and Enzyme Environmental Effects on the Electron Density of Drug Molecules.

Authors:  Florian Kleemiss; Erna K Wieduwilt; Emanuel Hupf; Ming W Shi; Scott G Stewart; Dylan Jayatilaka; Michael J Turner; Kunihisa Sugimoto; Eiji Nishibori; Tanja Schirmeister; Thomas C Schmidt; Bernd Engels; Simon Grabowsky
Journal:  Chemistry       Date:  2021-01-14       Impact factor: 5.236

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  4 in total

1.  Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound.

Authors:  Sylwia Pawlędzio; Maura Malinska; Florian Kleemiss; Simon Grabowsky; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2022-06-11       Impact factor: 5.588

2.  Hirshfeld atom refinement based on projector augmented wave densities with periodic boundary conditions.

Authors:  Paul Niklas Ruth; Regine Herbst-Irmer; Dietmar Stalke
Journal:  IUCrJ       Date:  2022-02-26       Impact factor: 4.769

3.  π-Hole bonding in a new co-crystal hydrate of gallic acid and pyrazine: static and dynamic charge density analysis.

Authors:  Rumpa Pal; Christian Jelsch; Koichi Momma; Simon Grabowsky
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2022-03-23

4.  Accurate crystal structures and chemical properties from NoSpherA2.

Authors:  Florian Kleemiss; Oleg V Dolomanov; Michael Bodensteiner; Norbert Peyerimhoff; Laura Midgley; Luc J Bourhis; Alessandro Genoni; Lorraine A Malaspina; Dylan Jayatilaka; John L Spencer; Fraser White; Bernhard Grundkötter-Stock; Simon Steinhauer; Dieter Lentz; Horst Puschmann; Simon Grabowsky
Journal:  Chem Sci       Date:  2020-11-09       Impact factor: 9.825

  4 in total

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