Literature DB >> 26799595

Libraries of Extremely Localized Molecular Orbitals. 2. Comparison with the Pseudoatoms Transferability.

Benjamin Meyer1,2, Benoît Guillot3,4, Manuel F Ruiz-Lopez1,2, Christian Jelsch3,4, Alessandro Genoni1,2.   

Abstract

Due to both technical and methodological difficulties, determining and analyzing charge densities of very large molecular systems represents a serious challenge that, in the crystallographers community, has been mainly tackled by observing that the so-called pseudoatoms of the electron density multipole expansions are reliably transferable from molecule to molecule. This has led to the construction of pseudoatoms databanks that have allowed successful refinements of crystallographic structures of macromolecules, while taking into account their corresponding reconstructed electron distributions. A recent alternative/complement to the previous approach is represented by techniques based on extremely localized molecular orbitals (ELMOs) that, due to their strict localization on small molecular fragments (e.g., atoms, bonds, and functional groups), are also in principle exportable from system to system. The ELMOs transferability has been already tested in detail, and, in this work, it has been compared to the one of the pseudoatoms. To accomplish this task, electron distributions obtained both through the transfer of pseudoatoms and through the transfer of extremely localized molecular orbitals have been analyzed, especially taking into account topological properties and similarity indexes. The obtained results indicate that all the considered reconstruction methods give completely reasonable and similar charge densities, and, consequently, the new ELMOs libraries will probably represent new useful tools not only for refining crystal structures but also for computing approximate electronic properties of very large molecules.

Year:  2016        PMID: 26799595     DOI: 10.1021/acs.jctc.5b01008

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

1.  DiSCaMB: a software library for aspherical atom model X-ray scattering factor calculations with CPUs and GPUs.

Authors:  Michał L Chodkiewicz; Szymon Migacz; Witold Rudnicki; Anna Makal; Jarosław A Kalinowski; Nigel W Moriarty; Ralf W Grosse-Kunstleve; Pavel V Afonine; Paul D Adams; Paulina Maria Dominiak
Journal:  J Appl Crystallogr       Date:  2018-02-01       Impact factor: 3.304

2.  lamaGOET: an interface for quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

Review 3.  Quantum crystallography.

Authors:  Simon Grabowsky; Alessandro Genoni; Hans-Beat Bürgi
Journal:  Chem Sci       Date:  2017-03-27       Impact factor: 9.825

4.  The advanced treatment of hydrogen bonding in quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Dylan Jayatilaka; Michael J Turner; Kunihisa Sugimoto; Eiji Nishibori; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

5.  Using invariom modelling to distinguish correct and incorrect central atoms in `duplicate structures' with neighbouring 3d elements.

Authors:  Claudia M Wandtke; Matthias Weil; Jim Simpson; Birger Dittrich
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2017-09-29

6.  Electron density learning of non-covalent systems.

Authors:  Alberto Fabrizio; Andrea Grisafi; Benjamin Meyer; Michele Ceriotti; Clemence Corminboeuf
Journal:  Chem Sci       Date:  2019-09-09       Impact factor: 9.825

  6 in total

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