Literature DB >> 34172972

gEAR: Gene Expression Analysis Resource portal for community-driven, multi-omic data exploration.

Joshua Orvis1, Brian Gottfried1, Jayaram Kancherla2,3,4, Ricky S Adkins1, Yang Song1, Amiel A Dror5,6, Dustin Olley1, Kevin Rose7, Elena Chrysostomou7, Michael C Kelly8, Beatrice Milon7, Maggie S Matern7, Hela Azaiez9, Brian Herb1, Carlo Colantuoni1,10, Robert L Carter1, Seth A Ament1,11, Matthew W Kelley8, Owen White1, Hector Corrada Bravo2,3,4, Anup Mahurkar1, Ronna Hertzano12,13,14.   

Abstract

Entities:  

Mesh:

Year:  2021        PMID: 34172972      PMCID: PMC8996439          DOI: 10.1038/s41592-021-01200-9

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   47.990


× No keyword cloud information.
  10 in total

1.  The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.

Authors:  Kim D Pruitt; Jennifer Harrow; Rachel A Harte; Craig Wallin; Mark Diekhans; Donna R Maglott; Steve Searle; Catherine M Farrell; Jane E Loveland; Barbara J Ruef; Elizabeth Hart; Marie-Marthe Suner; Melissa J Landrum; Bronwen Aken; Sarah Ayling; Robert Baertsch; Julio Fernandez-Banet; Joshua L Cherry; Val Curwen; Michael Dicuccio; Manolis Kellis; Jennifer Lee; Michael F Lin; Michael Schuster; Andrew Shkeda; Clara Amid; Garth Brown; Oksana Dukhanina; Adam Frankish; Jennifer Hart; Bonnie L Maidak; Jonathan Mudge; Michael R Murphy; Terence Murphy; Jeena Rajan; Bhanu Rajput; Lillian D Riddick; Catherine Snow; Charles Steward; David Webb; Janet A Weber; Laurens Wilming; Wenyu Wu; Ewan Birney; David Haussler; Tim Hubbard; James Ostell; Richard Durbin; David Lipman
Journal:  Genome Res       Date:  2009-06-04       Impact factor: 9.043

2.  Method of the Year: spatially resolved transcriptomics.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2021-01       Impact factor: 28.547

3.  High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.

Authors:  Jeffrey R Moffitt; Junjie Hao; Guiping Wang; Kok Hao Chen; Hazen P Babcock; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-13       Impact factor: 11.205

4.  NCBI GEO: archive for functional genomics data sets--update.

Authors:  Tanya Barrett; Stephen E Wilhite; Pierre Ledoux; Carlos Evangelista; Irene F Kim; Maxim Tomashevsky; Kimberly A Marshall; Katherine H Phillippy; Patti M Sherman; Michelle Holko; Andrey Yefanov; Hyeseung Lee; Naigong Zhang; Cynthia L Robertson; Nadezhda Serova; Sean Davis; Alexandra Soboleva
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

5.  Mendelian Inheritance in Man and its online version, OMIM.

Authors:  Victor A McKusick
Journal:  Am J Hum Genet       Date:  2007-03-08       Impact factor: 11.025

6.  The UCSC Genome Browser database: 2019 update.

Authors:  Maximilian Haeussler; Ann S Zweig; Cath Tyner; Matthew L Speir; Kate R Rosenbloom; Brian J Raney; Christopher M Lee; Brian T Lee; Angie S Hinrichs; Jairo Navarro Gonzalez; David Gibson; Mark Diekhans; Hiram Clawson; Jonathan Casper; Galt P Barber; David Haussler; Robert M Kuhn; W James Kent
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

7.  Ensembl 2019.

Authors:  Fiona Cunningham; Premanand Achuthan; Wasiu Akanni; James Allen; M Ridwan Amode; Irina M Armean; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; Sanjay Boddu; Carla Cummins; Claire Davidson; Kamalkumar Jayantilal Dodiya; Astrid Gall; Carlos García Girón; Laurent Gil; Tiago Grego; Leanne Haggerty; Erin Haskell; Thibaut Hourlier; Osagie G Izuogu; Sophie H Janacek; Thomas Juettemann; Mike Kay; Matthew R Laird; Ilias Lavidas; Zhicheng Liu; Jane E Loveland; José C Marugán; Thomas Maurel; Aoife C McMahon; Benjamin Moore; Joannella Morales; Jonathan M Mudge; Michael Nuhn; Denye Ogeh; Anne Parker; Andrew Parton; Mateus Patricio; Ahamed Imran Abdul Salam; Bianca M Schmitt; Helen Schuilenburg; Dan Sheppard; Helen Sparrow; Eloise Stapleton; Marek Szuba; Kieron Taylor; Glen Threadgold; Anja Thormann; Alessandro Vullo; Brandon Walts; Andrea Winterbottom; Amonida Zadissa; Marc Chakiachvili; Adam Frankish; Sarah E Hunt; Myrto Kostadima; Nick Langridge; Fergal J Martin; Matthieu Muffato; Emily Perry; Magali Ruffier; Daniel M Staines; Stephen J Trevanion; Bronwen L Aken; Andrew D Yates; Daniel R Zerbino; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  Epiviz: interactive visual analytics for functional genomics data.

Authors:  Florin Chelaru; Llewellyn Smith; Naomi Goldstein; Héctor Corrada Bravo
Journal:  Nat Methods       Date:  2014-08-03       Impact factor: 28.547

9.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

  10 in total
  28 in total

1.  Transcriptomic and epigenomic analyses explore the potential role of H3K4me3 in neomycin-induced cochlear Lgr5+ progenitor cell regeneration of hair cells.

Authors:  Xiangyu Ma; Shasha Zhang; Shijie Qin; Jiamin Guo; Jia Yuan; Ruiying Qiang; Shan Zhou; Wei Cao; Jianming Yang; Fei Ma; Renjie Chai
Journal:  Hum Cell       Date:  2022-06-06       Impact factor: 4.174

Review 2.  Cell type ontologies of the Human Cell Atlas.

Authors:  David Osumi-Sutherland; Chuan Xu; Maria Keays; Adam P Levine; Peter V Kharchenko; Aviv Regev; Ed Lein; Sarah A Teichmann
Journal:  Nat Cell Biol       Date:  2021-11-08       Impact factor: 28.824

3.  Three distinct Atoh1 enhancers cooperate for sound receptor hair cell development.

Authors:  Zhengnan Luo; Yi Du; Shuting Li; He Zhang; Muya Shu; Di Zhang; Shunji He; Guangqin Wang; Falong Lu; Zhiyong Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-04       Impact factor: 12.779

4.  Transcriptome profiling of the ventral pallidum reveals a role for pallido-thalamic neurons in cocaine reward.

Authors:  Michel Engeln; Megan E Fox; Ramesh Chandra; Eric Y Choi; Hyungwoo Nam; Houman Qadir; Shavin S Thomas; Victoria M Rhodes; Makeda D Turner; Rae J Herman; Cali A Calarco; Mary Kay Lobo
Journal:  Mol Psychiatry       Date:  2022-06-28       Impact factor: 13.437

Review 5.  Hearing restoration and the stria vascularis: evidence for the role of the immune system in hearing restoration.

Authors:  Nadia L Samaha; Mohamad M Almasri; J Dixon Johns; Michael Hoa
Journal:  Curr Opin Otolaryngol Head Neck Surg       Date:  2021-10-01       Impact factor: 1.814

6.  Cell-type identity of the avian utricle.

Authors:  Mirko Scheibinger; Amanda Janesick; Nesrine Benkafadar; Daniel C Ellwanger; Taha A Jan; Stefan Heller
Journal:  Cell Rep       Date:  2022-09-27       Impact factor: 9.995

7.  RIPOR2-mediated autophagy dysfunction is critical for aminoglycoside-induced hearing loss.

Authors:  Jinan Li; Chang Liu; Ulrich Müller; Bo Zhao
Journal:  Dev Cell       Date:  2022-09-15       Impact factor: 13.417

8.  Two-stage linked component analysis for joint decomposition of multiple biologically related data sets.

Authors:  Huan Chen; Brian Caffo; Genevieve Stein-O'Brien; Jinrui Liu; Ben Langmead; Carlo Colantuoni; Luo Xiao
Journal:  Biostatistics       Date:  2022-10-14       Impact factor: 5.279

9.  Development and Characterization of a Topically Deliverable Prophylactic Against Oxidative Damage in Cochlear Cells.

Authors:  Elizabeth M Arrigali; Monica A Serban
Journal:  Front Pharmacol       Date:  2022-06-09       Impact factor: 5.988

10.  Clinical and genetic risk factors for radiation-associated ototoxicity: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.

Authors:  Matthew R Trendowski; Jessica L Baedke; Yadav Sapkota; Lois B Travis; Xindi Zhang; Omar El Charif; Heather E Wheeler; Wendy M Leisenring; Leslie L Robison; Melissa M Hudson; Lindsay M Morton; Kevin C Oeffinger; Rebecca M Howell; Gregory T Armstrong; Smita Bhatia; M Eileen Dolan
Journal:  Cancer       Date:  2021-07-19       Impact factor: 6.860

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.