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Literature DB >> 33408395

Method of the Year: spatially resolved transcriptomics.

Vivien Marx¹.

Abstract

Year: 2021 PMID： 33408395 DOI： 10.1038/s41592-020-01033-y

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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Cited

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80 in total

Review 1. Molecular Profiling of the Cardiac Conduction System: the Dawn of a New Era.

Authors: Sruthi Mantri; Sean M Wu; William R Goodyer
Journal: Curr Cardiol Rep Date: 2021-07-01 Impact factor: 2.931

Review 2. Micronutrient imbalance and common phenotypes in neural tube defects.

Authors: Anneke Dixie Kakebeen; Lee Niswander
Journal: Genesis Date: 2021-10-19 Impact factor: 2.487

3. Stardust: improving spatial transcriptomics data analysis through space-aware modularity optimization-based clustering.

Authors: Simone Avesani; Eva Viesi; Luca Alessandrì; Giovanni Motterle; Vincenzo Bonnici; Marco Beccuti; Raffaele Calogero; Rosalba Giugno
Journal: Gigascience Date: 2022-08-10 Impact factor: 7.658

4. Biological Misinterpretation of Transcriptional Signatures in Tumor Samples Can Unknowingly Undermine Mechanistic Understanding and Faithful Alignment with Preclinical Data.

Authors: Natalie C Fisher; Ryan M Byrne; Nigel B Jamieson; Philip D Dunne; Holly Leslie; Colin Wood; Assya Legrini; Andrew J Cameron; Baharak Ahmaderaghi; Shania M Corry; Sudhir B Malla; Raheleh Amirkhah; Aoife J McCooey; Emily Rogan; Keara L Redmond; Svetlana Sakhnevych; Enric Domingo; James Jackson; Maurice B Loughrey; Simon Leedham; Tim Maughan; Mark Lawler; Owen J Sansom; Felicity Lamrock; Viktor H Koelzer
Journal: Clin Cancer Res Date: 2022-09-15 Impact factor: 13.801

5. Comparison of the tumor immune microenvironment and checkpoint blockade biomarkers between stage III and IV non-small cell lung cancer.

Authors: Yinjie Gao; Michelle M Stein; Matthew Kase; Amy L Cummings; Ramit Bharanikumar; Denise Lau; Edward B Garon; Sandip P Patel
Journal: Cancer Immunol Immunother Date: 2022-07-26 Impact factor: 6.630

Method of the Year: spatially resolved transcriptomics.

Review 1. Molecular Profiling of the Cardiac Conduction System: the Dawn of a New Era.

Review 2. Micronutrient imbalance and common phenotypes in neural tube defects.

3. Stardust: improving spatial transcriptomics data analysis through space-aware modularity optimization-based clustering.

4. Biological Misinterpretation of Transcriptional Signatures in Tumor Samples Can Unknowingly Undermine Mechanistic Understanding and Faithful Alignment with Preclinical Data.

5. Comparison of the tumor immune microenvironment and checkpoint blockade biomarkers between stage III and IV non-small cell lung cancer.

6. Microscopic examination of spatial transcriptome using Seq-Scope.

Review 7. Comprehending the Proteomic Landscape of Ovarian Cancer: A Road to the Discovery of Disease Biomarkers.

8. Combined nanopore and single-molecule real-time sequencing survey of human betaherpesvirus 5 transcriptome.

9. Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain.

Review 10. Selecting gene features for unsupervised analysis of single-cell gene expression data.