Literature DB >> 34158485

Physical constraints and functional plasticity of cellulases.

Jeppe Kari1, Gustavo A Molina1, Kay S Schaller1, Corinna Schiano-di-Cola1, Stefan J Christensen1, Silke F Badino1, Trine H Sørensen2, Nanna S Røjel3, Malene B Keller4, Nanna Rolsted Sørensen3, Bartlomiej Kolaczkowski3, Johan P Olsen2, Kristian B R M Krogh2, Kenneth Jensen2, Ana M Cavaleiro2, Günther H J Peters5, Nikolaj Spodsberg2, Kim Borch2, Peter Westh6.   

Abstract

Enzyme reactions, both in Nature and technical applications, commonly occur at the interface of immiscible phases. Nevertheless, stringent descriptions of interfacial enzyme catalysis remain sparse, and this is partly due to a shortage of coherent experimental data to guide and assess such work. In this work, we produced and kinetically characterized 83 cellulases, which revealed a conspicuous linear free energy relationship (LFER) between the substrate binding strength and the activation barrier. The scaling occurred despite the investigated enzymes being structurally and mechanistically diverse. We suggest that the scaling reflects basic physical restrictions of the hydrolytic process and that evolutionary selection has condensed cellulase phenotypes near the line. One consequence of the LFER is that the activity of a cellulase can be estimated from its substrate binding strength, irrespectively of structural and mechanistic details, and this appears promising for in silico selection and design within this industrially important group of enzymes.

Entities:  

Year:  2021        PMID: 34158485     DOI: 10.1038/s41467-021-24075-y

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  36 in total

Review 1.  Interfacial enzyme kinetics at the phospholipid/water interface: practical considerations.

Authors:  R A Deems
Journal:  Anal Biochem       Date:  2000-12-01       Impact factor: 3.365

Review 2.  Industrial enzyme applications.

Authors:  Ole Kirk; Torben Vedel Borchert; Claus Crone Fuglsang
Journal:  Curr Opin Biotechnol       Date:  2002-08       Impact factor: 9.740

3.  A theoretical approach to some analytical properties of heterogeneous enzymatic assays.

Authors:  O A Gutiérrez; M Chavez; E Lissi
Journal:  Anal Chem       Date:  2004-05-01       Impact factor: 6.986

4.  Biomass recalcitrance: engineering plants and enzymes for biofuels production.

Authors:  Michael E Himmel; Shi-You Ding; David K Johnson; William S Adney; Mark R Nimlos; John W Brady; Thomas D Foust
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

5.  A generic rate law for surface-active enzymes.

Authors:  Onder Kartal; Oliver Ebenhöh
Journal:  FEBS Lett       Date:  2013-07-23       Impact factor: 4.124

Review 6.  Enzyme catalysis on solid surfaces.

Authors:  Nicolas Laurent; Rose Haddoub; Sabine L Flitsch
Journal:  Trends Biotechnol       Date:  2008-04-20       Impact factor: 19.536

Review 7.  Fungal cellulases.

Authors:  Christina M Payne; Brandon C Knott; Heather B Mayes; Henrik Hansson; Michael E Himmel; Mats Sandgren; Jerry Ståhlberg; Gregg T Beckham
Journal:  Chem Rev       Date:  2015-01-28       Impact factor: 60.622

Review 8.  The realm of cellulases in biorefinery development.

Authors:  Anuj K Chandel; G Chandrasekhar; Messias Borges Silva; Silvio Silvério da Silva
Journal:  Crit Rev Biotechnol       Date:  2011-09-19       Impact factor: 8.429

9.  Enzyme action: comparison on soluble and insoluble substrate.

Authors:  J M Schurr; A D McLaren
Journal:  Science       Date:  1966-05-20       Impact factor: 47.728

10.  The carbohydrate-active enzymes database (CAZy) in 2013.

Authors:  Vincent Lombard; Hemalatha Golaconda Ramulu; Elodie Drula; Pedro M Coutinho; Bernard Henrissat
Journal:  Nucleic Acids Res       Date:  2013-11-21       Impact factor: 16.971

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  3 in total

Review 1.  Fungal cellulases: protein engineering and post-translational modifications.

Authors:  Ruiqin Zhang; Chenghao Cao; Jiahua Bi; Yanjun Li
Journal:  Appl Microbiol Biotechnol       Date:  2021-12-10       Impact factor: 4.813

2.  Acoustic force spectroscopy reveals subtle differences in cellulose unbinding behavior of carbohydrate-binding modules.

Authors:  Markus Hackl; Edward V Contrada; Jonathan E Ash; Atharv Kulkarni; Jinho Yoon; Hyeon-Yeol Cho; Ki-Bum Lee; John M Yarbrough; Cesar A López; Sandrasegaram Gnanakaran; Shishir P S Chundawat
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-10       Impact factor: 12.779

3.  Sabatier Principle for Rationalizing Enzymatic Hydrolysis of a Synthetic Polyester.

Authors:  Jenny Arnling Bååth; Kenneth Jensen; Kim Borch; Peter Westh; Jeppe Kari
Journal:  JACS Au       Date:  2022-05-12
  3 in total

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