Jenny Arnling Bååth1, Kenneth Jensen2, Kim Borch2, Peter Westh1, Jeppe Kari3. 1. Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Kgs. Lyngby DK-2800, Denmark. 2. Novozymes A/S, Biologiens Vej 2, Kgs. Lyngby DK-2800, Denmark. 3. Department of Science and Environment, Roskilde University, Universitetsvej 1, Roskilde DK-4000, Denmark.
Abstract
Interfacial enzyme reactions are common in Nature and in industrial settings, including the enzymatic deconstruction of poly(ethylene terephthalate) (PET) waste. Kinetic descriptions of PET hydrolases are necessary for both comparative analyses, discussions of structure-function relations and rational optimization of technical processes. We investigated whether the Sabatier principle could be used for this purpose. Specifically, we compared the kinetics of two well-known PET hydrolases, leaf-branch compost cutinase (LCC) and a cutinase from the bacterium Thermobifida fusca (TfC), when adding different concentrations of the surfactant cetyltrimethylammonium bromide (CTAB). We found that CTAB consistently lowered the strength of enzyme-PET interactions, while its effect on enzymatic turnover was strongly biphasic. Thus, at gradually increasing CTAB concentrations, turnover was initially promoted and subsequently suppressed. This correlation with maximal turnover at an intermediate binding strength was in accordance with the Sabatier principle. One consequence of these results was that both enzymes had too strong intrinsic interaction with PET for optimal turnover, especially TfC, which showed a 20-fold improvement of k cat at the maximum. LCC on the other hand had an intrinsic substrate affinity closer to the Sabatier optimum, and the turnover rate was 5-fold improved at weakened substrate binding. Our results showed that the Sabatier principle may indeed rationalize enzymatic PET degradation and support process optimization. Finally, we suggest that future discovery efforts should consider enzymes with weakened substrate binding because strong adsorption seems to limit their catalytic performance.
Interfacial enzyme reactions are common in Nature and in industrial settings, including the enzymatic deconstruction of poly(ethylene terephthalate) (PET) waste. Kinetic descriptions of PET hydrolases are necessary for both comparative analyses, discussions of structure-function relations and rational optimization of technical processes. We investigated whether the Sabatier principle could be used for this purpose. Specifically, we compared the kinetics of two well-known PET hydrolases, leaf-branch compost cutinase (LCC) and a cutinase from the bacterium Thermobifida fusca (TfC), when adding different concentrations of the surfactant cetyltrimethylammonium bromide (CTAB). We found that CTAB consistently lowered the strength of enzyme-PET interactions, while its effect on enzymatic turnover was strongly biphasic. Thus, at gradually increasing CTAB concentrations, turnover was initially promoted and subsequently suppressed. This correlation with maximal turnover at an intermediate binding strength was in accordance with the Sabatier principle. One consequence of these results was that both enzymes had too strong intrinsic interaction with PET for optimal turnover, especially TfC, which showed a 20-fold improvement of k cat at the maximum. LCC on the other hand had an intrinsic substrate affinity closer to the Sabatier optimum, and the turnover rate was 5-fold improved at weakened substrate binding. Our results showed that the Sabatier principle may indeed rationalize enzymatic PET degradation and support process optimization. Finally, we suggest that future discovery efforts should consider enzymes with weakened substrate binding because strong adsorption seems to limit their catalytic performance.
Enzymatic hydrolysis
of poly(ethylene terephthalate) (PET) has
been recognized as a potential technology for bioprocessing of some
plastic waste streams.[1] Several studies
have reported promising enzyme candidates, including the PETase from Ideonella sakaiensis,[2] the leaf-branch compost cutinase (LCC),[3,4] and
cutinases from various Thermobifida species.[5−8] However, there is still a need to engineer better catalytic efficiency
and improve reaction conditions on PET. Previous activity in this
area has used strategies such as rational redesign of the active site,[9,10] construction of chimeric enzymes with binding modules,[11,12] and application of surfactants in the reaction medium.[13,14]To optimize enzymes rationally, it is crucial to have a molecular-level
understanding of structure–function relationships. The experimental
input that links structure and function is typically kinetic data,
but there is no general framework to rationalize the kinetics of these
interfacial enzymes, and this has hampered fundamental and comparative
descriptions of PET hydrolases. In lack of a detailed kinetic model,
the PET hydrolase reaction may be coarsely described by its most basic
steps; complexation, catalysis, and dissociation, as shown in Figure A. In this three-step
model, the first involves enzyme adsorption on the substrate surface
and transfer of a piece of the PET molecule into the enzyme’s
active site. The second step encompasses the covalent changes of the
hydrolytic reaction (catalysis), while the third delineates product
release and the enzyme’s dissociation to the aqueous bulk.
This model bears some resemblance to the classical Henri–Michaelis–Menten
scheme, but as the substrate is insoluble, the complexation step differs
fundamentally. Unlike enzymes acting in the bulk phase, interfacial
enzymes such as PET hydrolases need to compete with attractive forces
in the substrate matrix to make a productive enzyme–substrate
complex[15−17] (see Figure B). One consequence of this is that the effective substrate
concentration in interfacial enzyme reactions may be correlated with
ligand-binding strength. Thus, the tighter the binding, the more diverse
polymer conformations on the surface could potentially be transferred
to the active site.[18−20] However, a high ligand-binding affinity may come
at the cost of turnover speed.[21] This type
of tradeoff between binding strength and rate is well-known within
inorganic, heterogeneous catalysis, and is originally coined as the
Sabatier principle, which states that efficient catalysis occurs when
the catalyst binds its reactant with intermediate strength.[22,23] The Sabatier principle has recently been proven useful for predicting
and rationalizing catalytic properties of cellulases[24,25] and as a guide for computer-aided enzyme design and discovery.[26]
Figure 1
(A) Simplified reaction scheme for enzymatic degradation
of PET.
PET hydrolase (red cartoon) binds to the PET surface and catalyzes
the hydrolysis of ester bond(s), releasing soluble products (red disks),
before enzyme and products dissociate into the solution. (B) Illustration
of the enzyme–substrate complex at the solid–liquid
interface. The enzyme needs to dislodge a small piece of the polymeric
substrate from the matrix to access the scissile bond and make a productive
enzyme–substrate complex.
(A) Simplified reaction scheme for enzymatic degradation
of PET.
PET hydrolase (red cartoon) binds to the PET surface and catalyzes
the hydrolysis of ester bond(s), releasing soluble products (red disks),
before enzyme and products dissociate into the solution. (B) Illustration
of the enzyme–substrate complex at the solid–liquid
interface. The enzyme needs to dislodge a small piece of the polymeric
substrate from the matrix to access the scissile bond and make a productive
enzyme–substrate complex.In this study, we investigate whether the Sabatier principle could
rationalize the kinetics of two well-known PET hydrolases; LCC and
a cutinase from the thermophilic bacterium Thermobifida
fusca (TfC). We used two types of steady-state measurements
to assess kinetic parameters for the hydrolysis of suspended PET particles
and tuned enzyme–substrate binding strength through the addition
of the cationic surfactant cetyltrimethylammonium bromide (CTAB).
Results
We have applied a modified Michaelis–Menten (MM) approach
to assess the kinetics of two PET hydrolases, LCC and TfC. Specifically,
we collected one set of data in the conventional way with substrate
excess (convMM analysis), while another was made in the
inverse concentration regime with enzyme excess (invMM
analysis). We characterized both enzymes at different concentrations
of the cationic surfactant CTAB, and derived kinetic parameters for
both convMM and invMM by non-linear regression
as described in the Experimental section and
in the Supporting Information. Experimental
data (circles) and the results of the regression analyses (lines)
are illustrated in Figure .
Figure 2
Experimental data at 50 °C for conventional (panel A,C) and
inverse (panel B,D) MM analysis. Measurements (circles) were conducted
for both LCC and TfC in buffers supplemented with different concentrations
of the cationic surfactant CTAB. The CTAB concentrations are indicated
by color codes in each panel. The results were analyzed with respect
to the conventional and inverse MM equation, eqs and 5, see the Experimental section. Error bars represent standard
deviations of triplicate measurements.
Experimental data at 50 °C for conventional (panel A,C) and
inverse (panel B,D) MM analysis. Measurements (circles) were conducted
for both LCC and TfC in buffers supplemented with different concentrations
of the cationic surfactant CTAB. The CTAB concentrations are indicated
by color codes in each panel. The results were analyzed with respect
to the conventional and inverse MM equation, eqs and 5, see the Experimental section. Error bars represent standard
deviations of triplicate measurements.Experimental values for the kinetic parameters invKM, invVmax, convKM, and convVmax (defined in eqs –6, Experimental section) derived in Figure are listed in Table S1 in
the Supporting Information. Inspection
of these numbers revealed systematic effects of the surfactant. In
particular, we found that the maximal specific rate from both the
conventional (convVmax/E0, eq ) and inverse (invVmax/S0*, eq ) analyses
showed distinctive maxima at intermediate CTAB concentrations (Figure ). To put these observations
into perspective, we reiterate the meaning of the two parameters. convVmax/E0 is the usual maximal turnover (eq ), which is experimentally observed when essentially
all enzymes are complexed (when [ES] ∼ E0). The inverse parameter, invVmax/S0*, specifies the rate
when all attack sites on the PET surface is covered with enzyme (eq ). The effect of CTAB on
these two parameters was distinctive and quite similar for both enzymes.
Thus, for LCC both parameters increased approximately 5-fold between
[CTAB] = 0 and the maximum at [CTAB] ∼ 6 μM (Figure ). The analogous
increment for TfC was up to 20-fold, and it follows that CTAB strongly
lessened the difference in performance of a highly efficient (LCC)
and a mediocre (TfC) PET hydrolase.
Figure 3
Maximal specific rates for conventional
(convVmax/E0) and inverse
(invVmax/S0*) MM analysis
of LCC and TfC acting on PET particles at 50 °C. Symbols represent
kinetic parameters obtained with different concentrations of the cationic
surfactant CTAB (see Figure ). Maximal specific rates from the two analyses showed distinctive
optima at intermediate CTAB concentrations for both enzymes.
Maximal specific rates for conventional
(convVmax/E0) and inverse
(invVmax/S0*) MM analysis
of LCC and TfC acting on PET particles at 50 °C. Symbols represent
kinetic parameters obtained with different concentrations of the cationic
surfactant CTAB (see Figure ). Maximal specific rates from the two analyses showed distinctive
optima at intermediate CTAB concentrations for both enzymes.We conducted several experiments to explore possible
origins of
the biphasic curves in Figure . First, we found that at the concentrations used here, CTAB
had no significant effect on the two enzymes’ thermostability,
expressed as the apparent transition temperature, Tm, (Figure A). This figure also shows that Tm for
LCC was the same (about 84 °C) as reported previously in calcium-free
buffer.[4] As a result, it was not deemed
necessary to supplement the experiments (at 50 °C) with calcium
although this has been shown to significantly improve thermal stability
of LCC.[4] We only found minor effects of
CTAB on the catalytic performance against the small soluble substrate,
4-nitrophenyl butyrate (pNP-Bu). Specifically, when
adding a (low) CTAB concentration corresponding to the ascending parts
in Figure , we found
no effect on the activity of LCC and a moderate inhibitory effect
on TfC (Figure B).
Hence, the large initial increments in Figure could not be related to an intrinsic boost
in enzyme activity generated by the surfactant. Finally, we assessed
whether long-term exposure of the enzymes to high concentrations of
CTAB, corresponding to the descending parts in Figure , resulted in a subsequent decrease in kinetic
performance toward pNP-Bu. The results (Figure S3
in the Supporting Information) did not
reveal any loss of enzyme activity, and we conclude that CTAB does
not significantly influence the kinetic stability of the enzymes.
Figure 4
(A) Apparent
transition temperature, Tm, for LCC and
TfC in the absence and presence of CTAB at 10 or 100
μM. (B) Progress curves for LCC and TfC acting on the soluble
substrate pNP-Bu at no or a low concentration of
CTAB. Experiments were conducted in duplicate, and standard errors
represent the spread. CTAB had no considerable effect on either the
thermostability of the enzymes or their catalytic performance on the
small soluble pNP-substrate.
(A) Apparent
transition temperature, Tm, for LCC and
TfC in the absence and presence of CTAB at 10 or 100
μM. (B) Progress curves for LCC and TfC acting on the soluble
substrate pNP-Bu at no or a low concentration of
CTAB. Experiments were conducted in duplicate, and standard errors
represent the spread. CTAB had no considerable effect on either the
thermostability of the enzymes or their catalytic performance on the
small soluble pNP-substrate.Figure illustrates
adsorption behavior of LCC and TfC on the insoluble PET substrate
(in the absence of CTAB). We analyzed these measurements with respect
to a simple Langmuir isothermwhere Γ and Γmax are
coverage and saturation coverage, respectively, in mol enzyme per
g substrate, Efree is the molar concentration
of free enzyme (unbound enzyme), and KD is the dissociation constant. Lines in Figure represent the best fits of eq , and we found that TfC adsorbed
more tightly (KD = 22 ± 1.9 nM) compared
to LCC (KD = 260 ± 54 nM). However,
saturation coverage was higher for LCC, 40 ± 4.1 nmol/g PET,
compared to 15 ± 0.025 nmol/g for TfC.
Figure 5
Enzyme adsorption on
suspended PET particles (50 g/L) at 50 °C.
Symbols represent the measured coverage, Γ, as a function of
the free enzyme concentration, and lines are best fits of eq . Error bars represent
standard deviations of triplicate measurements. TfC showed the tightest
adsorption, whereas saturation coverage was substantially higher for
LCC, when comparing the two enzymes.
Enzyme adsorption on
suspended PET particles (50 g/L) at 50 °C.
Symbols represent the measured coverage, Γ, as a function of
the free enzyme concentration, and lines are best fits of eq . Error bars represent
standard deviations of triplicate measurements. TfC showed the tightest
adsorption, whereas saturation coverage was substantially higher for
LCC, when comparing the two enzymes.
Discussion
In recent years, gradually better PET degrading enzymes have been
identified, and this has spurred optimism regarding bioprocessing
of PET waste.[27−31] However, continuous improvement of catalytic efficiency through
engineering and discovery of novel enzymes will probably be necessary
to make biological approaches viable contributions to a circular plastic
economy. Progress in this field would benefit from a general framework
to compare and rationalize the performance of different enzymes and
conditions, and in the current work, we propose one potential approach
to this. The two main elements in the suggested framework are a modified
MM analysis (Figure ) and the Sabatier principle.Our results (see Figure ) revealed that addition of
the surfactant CTAB had a distinctive
and biphasic effect on the catalytic performance of two PET hydrolases.
Especially for TfC, moderate amounts of CTAB (20–30 μM)
substantially accelerated the maximal rate for both conventional and
inverse MM kinetics. This CTAB concentration is one or two orders
of magnitude below the critical micelle concentration,[32] and it did not exert any measurable reduction
in the thermostability of the investigated enzymes (Figure A). Neither did it significantly
alter the catalytic efficacy on a soluble substrate (Figures B and S3), and in light of this, we will test whether the biphasic
behavior could reflect CTAB-induced alterations in the strength of
interactions with the insoluble substrate.This idea has been
discussed before. In particular, Furukawa and
co-workers reported a beneficial effect of charged surfactants on
the enzymatic hydrolysis of PET films. They found that an anionic
surfactant promoted activity of the positively charged PETase from I. sakaiensis,[14] and that
a cationic surfactant boosted activity of another PET hydrolase, which
carried a net-negative charge at the experimental pH.[13] These observations were collectively ascribed to enhanced
enzyme adsorption driven by electrostatic interactions between enzyme
and an oppositely charged surfactant that accumulated on the PET surface.
However, this interpretation is not readily transferred to the current
data. First, we observed both activating and inhibitory effects of
the same surfactant (Figure ). Second, the two investigated enzymes have pI values, respectively,
above (LCC: pI 9.3) and below (TfC: pI 6.3) the experimental pH (pH
8.0). Nevertheless, the two enzymes responded analogously to the addition
of CTAB and the concomitant buildup of positive charge on the PET
surface.In search of a more robust interpretation of the biphasic
behavior
in Figure , we note
that the Michaelis constant may be used as a descriptor of substrate
affinity.[33,34] Thus, while not a true binding constant,
the concentration required to reach half-saturation under different
conditions provides some ranking of substrate interaction strength.
As illustrated in Table S1A in the Supporting Information, we found that KM values increased regularly
with the surfactant load throughout the investigated range. We conclude
that CTAB consistently lowered the strength of enzyme–substrate
interactions, and we will discuss the results in this perspective.
We acknowledge that other more specific effects of CTAB may influence
the maximal specific rates, and we will return to this in the concluding
paragraph.General relationships between binding strength and
catalytic turnover
can be expressed by the Sabatier principle,[35] which states that catalysis is most effective when the interaction
between a catalyst and reactants is intermediate in strength. The
intuitive underpinning is that tight binding implies slow dissociation
of stable enzyme–substrate intermediates, while weak binding
is associated with low complex concentration. Both of these limiting
cases lead to a poor overall rate, while an intermediate binding strength
balances off the two effects and hence supports a faster turnover.
The Sabatier principle has been widely employed within inorganic,
heterogeneous catalysis,[36] but it has also
been applied to interfacial enzyme reactions.[24,37] Experimentally, the principle can be illustrated in so-called volcano
plots, which have a measure of catalytic efficacy such as turnover
frequency on the ordinate and interaction strength on the abscissa.
For the current systems, this implies plotting the maximal specific
rate from either invMM or convMM as a function
of binding strength expressed as a Michaelis constant. Figure illustrates such plots, where
we used invKM (i.e., the enzyme
concentration required to reach half-saturation under conditions of
enzyme excess) as a descriptor of binding strength. These plots clearly
had volcano-like shapes and hence corroborated that intermediate binding
strength provides the most efficient catalysis in accord with the
Sabatier principle.
Figure 6
Volcano plots for TfC and LCC acting on insoluble PET.
The turnover
frequency under (A) enzyme saturation condition (convVmax/E0) or (B) substrate
saturation condition (invVmax/S0*) is plotted against the enzyme–substrate binding affinity
(invKM) for different concentrations of CTAB
in the background, as specified by the label in the plot. Symbols
represent kinetic parameters, and solid lines are guide to the eye.
Volcano plots for TfC and LCC acting on insoluble PET.
The turnover
frequency under (A) enzyme saturation condition (convVmax/E0) or (B) substrate
saturation condition (invVmax/S0*) is plotted against the enzyme–substrate binding affinity
(invKM) for different concentrations of CTAB
in the background, as specified by the label in the plot. Symbols
represent kinetic parameters, and solid lines are guide to the eye.One consequence of data in Figure is that LCC and particularly TfC bind their
substrate
too tightly for efficient catalysis. The tight binding of TfC was
reflected both in a low invKM (77 ± 15 nM, Table S1) and the independently
measured KD value (22 ± 1.9 nM, Figure ). This strong substrate
affinity occurred together with a slow maximal turnover of TfC (kcat ∼ 0.04 s–1), but
when the interaction was weakened by CTAB to a level of invKM ∼ 140 nM, the turnover rose
dramatically to about 0.8 s–1. Interestingly, an invKM of this magnitude also gave
rise to the highest values of both kcat for LCC (1.6 s–1, Figure A) and maxima in the inverse specific rates
for both enzymes (Figure B). Hence, it appears that a substrate affinity specified
by invKM ∼ 140 nM represents
the Sabatier optimum, where the lifetime of the enzyme–substrate
complex attains a favorable, intermediate value. As the inherent substrate
affinity measured without CTAB (see Figure ) was lower for LCC compared to TfC, it required
less CTAB to bring LCC to the Sabatier optimum (Figure ). This implied that the inherent substrate
affinity of LCC was closer to the Sabatier optimum, which explains
the larger activity increment (Figure A) at the maximum of TfC (20-fold) compared to LCC
(5-fold). The binding affinity of LCC appears to be better tuned for
the substrate and hence there is less to gain for this enzyme.Comparisons of LCC and TfC may be expanded by considering specific
changes in invMM and convMM parameters, respectively.
To this end, we already noted that the maximal turnover, kcat = convVmax/E0 (eq ), at the Sabatier optimum was about twice as high for LCC
than for TfC (Figure A). Comparisons of the inverse maximal rate invVmax/S0*, illustrated in Figure B, are more complicated as it reflects the
product of kcat and Γmax (eq ). From the binding
isotherm in Figure , it can be seen that LCC had around two times more binding sites
than TfC. As both kcat and Γmax were 2-fold higher for LCC, we would expect that this enzyme
performed 4-fold better than TfC under the most favorable conditions
(i.e., when the substrate is saturated with enzyme, and the binding
strength is adjusted to the Sabatier optimum). This prediction is
confirmed in Figure B, where direct and independent measurements of invVmax/S0* gave maximal values of about 9 and 40
nmol g–1 s–1 for TfC and LCC,
respectively. This supports the conclusion that the superior performance
of LCC on PET, which is widely recognized,[3,4,28,38] reflects partly
a low, nearly optimal substrate affinity (which is associated with
a high kcat) and partly a high capacity
of combining productively with different polymer conformations on
the PET surface (high attack site density). If indeed so, it would
be relevant to investigate other PET hydrolases with variable substrate
affinity. So far, focus has been on high affinity,[11,12,39−43] but the current work hints that this strategy may
not always be fruitful. Hence, we suggest that future discovery campaigns
consider enzymes with a broad spectrum of substrate-binding strengths.In conclusion, we have found that effects of the cationic surfactant
CTAB on the kinetics of two PET-hydrolases may be rationalized along
the lines of the Sabatier principle. We hasten to say, that other,
more specific effects of the surfactant cannot be ruled out by the
current experiments. However, controls focusing on thermodynamic-
and kinetic enzyme stability as well as the general catalytic performance
against soluble substrate failed to explain the pronounced kinetic
alterations observed on insoluble PET. Instead, we propose that the
biphasic effect of CTAB on the enzymatic turnover reflected a continuous
weakening in enzyme–substrate interactions as surfactant concentrations
rose. This weakening initially promoted and subsequently suppressed
enzyme activity as stipulated by the Sabatier principle. If indeed
applicable, this principle may be useful both in discussions of structure–function
relationship and for the optimization of technical PET degradation.
Regarding the latter, we note that the current work only covered conditions
of very low (<1%) degrees of PET conversion, where progress curves
on the same substrate have previously been shown to be essentially
linear.[44] This is a formal prerequisite
for the steady-state kinetic analysis performed here, but not for
use of the Sabatier principle per se. Future experimental work may
elucidate whether the principle can be applied to lengthy, industrially
relevant reaction conditions and if so, it could become a valuable
instrument within both enzyme discovery and optimization of reaction
conditions for PET hydrolases.
Experimental Section
Enzymes
Two cutinases, LCC [PDB: 4EB0] and TfC from T. fusca [PDB: 5ZOA], were heterologously expressed in Bacillus subtilis and purified in a similar way as
described previously.[45,46] The two enzymes are of the same
size (28 kDa) and have a sequence identity of approximately 60%. The
production of LCC incorporated the following two modifications compared
to the published procedures. The native signal peptide was replaced
by the signal peptide from the B. licheniformis α-amylase AmyL (FJ556804.1), and a histidine tag (6xH) was
added to the C-terminal. A small linker consisting of LE was inserted
between the C-terminal and His-tag. The fermentation broth was sterile
filtrated and 500 mM NaCl was added and adjusted to pH 7.5/NaOH. The
sample was loaded onto a Ni-Sepharose six Fast Flow column (GE Healthcare,
Piscataway, NJ, USA) equilibrated in 50 mM HEPES, pH 7.5 with 500
mM NaCl (buffer A). After loading, the column was washed with 10 column
volumes of buffer A, and bound proteins were eluted with 500 mM imidazole
in buffer A. The fractions containing the enzyme were pooled and applied
to a Sephadex G-25 (medium) (GE Healthcare, Piscataway, NJ, USA) column
equilibrated and eluted in 50 mM HEPES pH 7.5. Enzyme concentrations
were determined by Abs280. Molar extinction coefficients and theoretical
pI values were calculated using the protein identification and analysis
tools in the ExPASy Server.[47]Tm of the enzymes was determined by differential scanning
fluorimetry using a Nanotemper Prometheus Nt.48 (Nanotemper). Enzyme
samples (in pure phosphate buffer or supplemented with 10 or 100 μM
CTAB) were heated from 20 °C to 95 °C at 10% laser intensity
and a rate of 1.5 °C/min.
Substrates and Chemicals
The PET substrate used was
a semicrystalline PET powder purchased from Goodfellow Co. UK (Product
number ES306031). The typical particle size was about 100 μm.[48] This substrate has previously been characterized
with a reported Mw of 33 kDa and % crystallinity
of 38.[49] The powder was suspended in 50
mM sodium phosphate (NaPi) buffer pH 8.0. The surfactant CTAB (57-09-0)
and the substrate pNP-Bu(2635-84-9) were both purchased
from Sigma.
Binding Isotherms
The adsorption
of TfC and LCC to
PET was determined using a PET concentration of 50 g/L and (total)
enzyme concentrations ranging from 0–2 μM. Adsorption
measurements used 1 h equilibration in a thermomixer operated at 1000
rpm at 50 °C, and non-binding microtiter plates (Greiner Bio-One)
were used to reduce unproductive binding. Solids and liquids were
separated by centrifugation in a temperature-controlled centrifuge,
set to 50 °C. The protein content of the supernatant was determined
using a micro bicinchoninic acid protein kit from Thermo Fischer scientific
(product number 23225), as described previously.[48] Standard curves of the two enzymes (ranging from 0–2
μM in concentration) were used to quantify the amount of free
enzyme in the reactions (performed in triplicate). The bound enzyme
population was calculated from the difference between the total and
the free concentrations, and the bound fraction was used to assess
binding parameters as described previously.[48]
Activity Assay with pNP-Bu
To investigate
potential side effects of the surfactant CTAB on the two enzymes,
not related to surface phenomena and the Sabatier principle, we investigated
activity on a soluble pNP-substrate at different
concentrations of CTAB. One set of experiments was performed in order
to investigate if a long contact time with a high amount of CTAB present
(concentrations that resulted in a decrease in PET activity) possibly
resulted in (irreversible) enzyme denaturation. This control was performed
in two steps, with the first involving incubation of the enzymes with
either CTAB or in pure 50 mM NaPi buffer at 50 °C, shaking at
300 rpm. The samples were incubated in microtiter plates with 10 μM
enzyme and 0, 10, or 40 μM CTAB (LCC) or 0, 40, or 80 μM
CTAB (TfC). After 2 h, the samples were 1000-fold diluted to final
enzyme concentrations of 10 nM. These enzyme dilutions were used in
a second step, where enzyme activity was monitored on pNP-Bu. In a microtiter plate, 5 nM enzyme and 5 mM pNP-Bu were mixed, and the enzymatic release of pNP was monitored over 5 min in a plate reader at 405 nm at 25 °C.
Reactions were performed in duplicate, and blank samples without enzymes
were included. The concentration of released pNP
was calculated from standards with known concentrations.We
also assessed possible effects of CTAB on progress curves, which used
the soluble pNP substrate. In a volume of 100 μL,
reactions with 50 mM buffer, 5 nM enzyme, and 5 mM pNP-Bu, either with or without CTAB (1 μM for LCC and 10 μM
for TfC), were prepared, and the enzymatic release of pNP was monitored and analyzed as explained above. The CTAB concentrations
were selected to match concentrations resulting in an increased catalytic
rate in the activity measurement on the insoluble PET substrate.
Activity Assay for Solid PET Substrate and MM Analysis
For
determination of PET hydrolase activity on insoluble PET, a plate
reader-based assay (Abs240) adapted for initial rate kinetics was
used, described in detail elsewhere.[50] Enzyme
reactions were performed at 50 °C, in 50 mM NaPi buffer pH 8,
using non-binding microtiter plates (Greiner Bio-One), in an incubator
operated at 450 rpm (KS 4000 ic control, IKA, Staufen, Germany). Initial
activity measurements were performed in duplicate with a final volume
of 250 μL. The load of PET was 10 g/L, enzyme concentrations
were 0.10 μM, and the CTAB concentration range was from 0 to
100 μM. The contact times for these reactions were 2 h for TfC
and 30 min for LCC. Enzymatic product formation was quantified as
“bis(2-hydroxyethyl) terephthalate equivalents” (BHETeq),
which were defined by the supernatant absorbance at 240 nm normalized
against standard curves of BHET. Hence, the derived rates were based
on soluble products only and this has previously been shown to be
a good descriptor of the overall activity.[50] The results from initial activity measurements are presented in
Figure S4 in the Supporting Information.For kinetic analysis, two sets of experiments (each performed
in triplicates) were executed, either under conditions of enzyme saturation
(convMM) or substrate saturation (invMM). Experiments
under convMM used 0.1 μM enzyme and a PET load from
0–20 g/L, while invMM experiments used a fixed PET
load of 10 g/L and enzyme concentrations from 0–1 μM.
Both types of experiments were conducted in pure buffer and in buffers
supplemented by CTAB at concentrations ranging from 1–60 μM
(TfC) and 1–20 μM (LCC). Other assay conditions were
similar as explained above.
Data Analysis
The steady-state kinetics
of LCC and
TfC was analyzed under convMM and invMM conditions.
The former used a constant and low enzyme concentration (E0) and recorded initial rates for a number of substrate
loads (S0*, specified below). These results were analyzed
by the conventional MM equation (eq ). For invMM experiments, we used a fixed
substrate load and measured initial rates at gradually increasing
enzyme concentrations, E0. These latter
data were analyzed using the inverse MM equation (eq ). Background, validity, and limitations
of this approach have been discussed in detail elsewhere,[51,52] but we briefly reiterate the key relationships that are needed for
the current discussion. The pivot of the analysis is the assumption
that the mass load of a substrate (S0*) in g/L, which
is known in kinetic experiments, can be converted to an apparent molar
substrate concentration (S0) if one knows
the density of accessible surface sites (in mol/g). This number can
be approximated experimentally from a binding isotherm as the one
shown in Figure ,
where the saturation coverage (Γmax) gives the number
of accessible surface sites on 1 g PET substrate. We note that Γmax depends on both the enzyme and the physical properties
(particularly surface area) of the insoluble substrate. The apparent
molar concentration of the substrate may be written asUnder the condition of enzyme
excess,
the steady-state rate may be described using a rate equation, which
is symmetric to the MM equation (eq ) and sometimes called the inverse MM equation.[52]with invVmax being the maximal rate at substrate
saturation (i.e., the
rate when all accessible surface sites are in complex with an enzyme).
This may be expressed asThe Michaelis constant in eq , invKM, is the molar
enzyme concentration at the half-saturation point. The conventional
MM equation (eq ), which
holds under conditions of substrate excess, may be expressed with KM in mass units (g/L) as discussed elsewhere.[52]In eq , convVmax is
the maximal rate at enzyme saturation,
defined in the usual wayThe Michaelis constant convKM in eq has the unit
of mass concentration (g/L), but can be converted to invKM using the relationship invKM = convKMΓmax. We used the two MM equations (eqs and 5) to analyze the experimental data and the derived kinetic parameters
to rationalize and compare the kinetics of LCC and TfC. Additional
information on non-linear regression is described in detail in the Supporting Information.
Authors: Ren Wei; Gerlis von Haugwitz; Lara Pfaff; Jan Mican; Christoffel P S Badenhorst; Weidong Liu; Gert Weber; Harry P Austin; David Bednar; Jiri Damborsky; Uwe T Bornscheuer Journal: ACS Catal Date: 2022-02-28 Impact factor: 13.084
Authors: Erika Erickson; Thomas J Shakespeare; Felicia Bratti; Bonnie L Buss; Rosie Graham; McKenzie A Hawkins; Gerhard König; William E Michener; Joel Miscall; Kelsey J Ramirez; Nicholas A Rorrer; Michael Zahn; Andrew R Pickford; John E McGeehan; Gregg T Beckham Journal: ChemSusChem Date: 2021-11-05 Impact factor: 8.928