| Literature DB >> 34152087 |
Deirdre Weymann1, Samantha Pollard1,2, Brandon Chan1, Emma Titmuss3, Alexandra Bohm3, Janessa Laskin4,5, Steven J M Jones3,6, Erin Pleasance3, Jessica Nelson3, Alexandra Fok3, Howard Lim4,5, Aly Karsan3,4,7, Daniel J Renouf4,5, Kasmintan A Schrader6,8,9, Sophie Sun4,5, Stephen Yip7,10, David F Schaeffer11, Marco A Marra3,6, Dean A Regier1,2.
Abstract
BACKGROUND: Single-arm trials are common in precision oncology. Owing to the lack of randomized counterfactual, resultant data are not amenable to comparative outcomes analyses. Difference-in-difference (DID) methods present an opportunity to generate causal estimates of time-varying treatment outcomes. Using DID, our study estimates within-cohort effects of genomics-informed treatment versus standard care on clinical and cost outcomes.Entities:
Keywords: biostatistics; genomic sequencing; healthcare costs; precision oncology; quasi-experimental methods; treatment outcomes
Mesh:
Year: 2021 PMID: 34152087 PMCID: PMC8335838 DOI: 10.1002/cam4.4076
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
FIGURE 1Study flow diagram
Baseline study characteristics for patients with advanced cancer
| Characteristics |
| ||
|---|---|---|---|
| Genomics informed ( | Standard care ( |
| |
| Gender, female | 86 (61.43) | 149 (72.33) | 0.033 |
| Age at index, mean ( | 54.69 (13.58) | 54.68 (12.24) | 0.997 |
| Geographic area classification | 0.082 | ||
| Urban | 106 (75.71) | 161 (78.16) | |
| Rural | 32 (22.86) | 33 (16.02) | |
| Mixed | 1 (0.71) | 10 (4.85) | |
| LHA missing | 1 (0.71) | 2 (0.97) | |
| Primary cancer site | 0.865 | ||
| Breast | 42 (30.00) | 75 (36.41) | |
| Gastrointestinal | 30 (21.43) | 41 (19.90) | |
| Lung | 14 (10.00) | 20 (9.71) | |
| Sarcoma | 16 (11.43) | 15 (7.28) | |
| Pancreas | 6 (4.29) | 12 (5.83) | |
| Gynecological | 10 (7.14) | 15 (7.28) | |
| Other | 22 (15.71) | 28 (13.59) | |
| Year of diagnosis, mean ( | 2009.91 (7.77) | 2010.66 (5.81) | 0.303 |
| Stage at diagnosis | 0.883 | ||
| Stage I | 14 (10.00) | 21 (10.19) | |
| Stage II | 14 (10.00) | 27 (13.11) | |
| Stage III | 10 (7.14) | 16 (7.77) | |
| Stage IV | 23 (16.43) | 31 (15.05) | |
| REC, UNK, or NCR | 79 (56.43) | 111 (53.88) | |
| Number of lines prior to index date, mean ( | 2.71 (1.74) | 2.64 (1.66) | 0.720 |
Abbreviations: SD, standard deviation; REC, UNK, or NCR, recurrent, stage unknown, or no classification recommended. Significance level: p < 0.007 (= 0.05/7) after Bonferroni correction.
Frequencies and percentages reported for categorical variables, means, and standard deviations reported for continuous variables.
p‐value from Chi‐square tests for categorical variables and paired t‐tests for continuous variables.
FIGURE 2Pre‐ and post‐sequencing trends in average (A) time to treatment discontinuation; (B) time to next treatment; and (C) treatment cost
Difference‐in‐difference analysis of time‐varying treatment outcomes
| Characteristics | Time to treatment discontinuation (days) | Time to next treatment (days) | Therapy cost (CAD$) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Mean | SE |
| Mean | SE |
| Mean | SE |
| |
| Pre‐sequencing | |||||||||
| Genomics‐informed Tx group | 165.32 | 16.53 | 323.59 | 33.42 | 14,088.03 | 3231.48 | |||
| Standard care Tx group | 258.87 | 19.73 | 412.89 | 31.40 | 47,441.95 | 12,634.52 | |||
| Difference pre‐sequencing (Δx̅pre = x̅genomics,pre‐ x̅standard,pre) | −93.55 | 25.62 | <0.0001 | −89.31 | 45.03 | 0.047 | −33,353.92 | 12,982.28 | 0.010 |
| Post‐sequencing | |||||||||
| Genomics‐informed Tx group | 135.18 | 20.52 | 190.30 | 15.67 | 70,227.90 | 28,452.51 | |||
| Standard care Tx group | 126.99 | 11.05 | 188.54 | 13.38 | 12,483.97 | 2982.05 | |||
| Difference post‐sequencing (Δx̅post = x̅genomics,post‐ x̅standard,post) | 8.19 | 23.32 | 0.725 | 1.76 | 20.42 | 0.931 | 57,743.93 | 28,535.11 | 0.043 |
| Incremental effect (Δx̅ = Δx̅post‐ Δx̅pre) | 101.74 | 34.05 | 0.003 | 91.07 | 44.94 | 0.043 | 91,097.85 | 31,690.27 | 0.004 |
Abbreviations: SE, standard error; Tx, treatment.
Bonferroni correction was used for multiple comparisons.
Significance level: p < 0.006 (= 0.05/9) after correction. Non‐parametric bootstrapping clustered by primary tumor site estimated standard errors. Reported confidence intervals are bias corrected. Costs are reported in 2018 Canadian dollars.