Literature DB >> 34127690

Major ocean currents may shape the microbiome of the topshell Phorcus sauciatus in the NE Atlantic Ocean.

Ricardo Sousa1,2,3, Joana Vasconcelos3,4,5, Iván Vera-Escalona5, João Delgado2,6, Mafalda Freitas1,2,3, José A González7, Rodrigo Riera8,9.   

Abstract

Studies on microbial communities are pivotal to understand the role and the evolutionary paths of the host and their associated microorganisms in the ecosystems. Meta-genomics techniques have proven to be one of the most effective tools in the identification of endosymbiotic communities of host species. The microbiome of the highly exploited topshell Phorcus sauciatus was characterized in the Northeastern Atlantic (Portugal, Madeira, Selvagens, Canaries and Azores). Alpha diversity analysis based on observed OTUs showed significant differences among regions. The Principal Coordinates Analysis of beta-diversity based on presence/absence showed three well differentiated groups, one from Azores, a second from Madeira and the third one for mainland Portugal, Selvagens and the Canaries. The microbiome results may be mainly explained by large-scale oceanographic processes of the study region, i.e., the North Atlantic Subtropical Gyre, and specifically by the Canary Current. Our results suggest the feasibility of microbiome as a model study to unravel biogeographic and evolutionary processes in marine species with high dispersive potential.

Entities:  

Year:  2021        PMID: 34127690     DOI: 10.1038/s41598-021-91448-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  37 in total

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Authors:  Carlos Pedrós-Alió
Journal:  Ann Rev Mar Sci       Date:  2012

2.  Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Authors:  J Gregory Caporaso; Christian L Lauber; William A Walters; Donna Berg-Lyons; Catherine A Lozupone; Peter J Turnbaugh; Noah Fierer; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-03       Impact factor: 11.205

Review 3.  Emerging technologies in DNA sequencing.

Authors:  Michael L Metzker
Journal:  Genome Res       Date:  2005-12       Impact factor: 9.043

Review 4.  Sponge-associated microorganisms: evolution, ecology, and biotechnological potential.

Authors:  Michael W Taylor; Regina Radax; Doris Steger; Michael Wagner
Journal:  Microbiol Mol Biol Rev       Date:  2007-06       Impact factor: 11.056

Review 5.  Genomic insights into the marine sponge microbiome.

Authors:  Ute Hentschel; Jörn Piel; Sandie M Degnan; Michael W Taylor
Journal:  Nat Rev Microbiol       Date:  2012-07-30       Impact factor: 60.633

Review 6.  Symbiosis as a general principle in eukaryotic evolution.

Authors:  Angela E Douglas
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-02-01       Impact factor: 10.005

7.  Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products.

Authors:  Gregory B Gloor; Ruben Hummelen; Jean M Macklaim; Russell J Dickson; Andrew D Fernandes; Roderick MacPhee; Gregor Reid
Journal:  PLoS One       Date:  2010-10-26       Impact factor: 3.240

8.  Diversity, structure and convergent evolution of the global sponge microbiome.

Authors:  Torsten Thomas; Lucas Moitinho-Silva; Miguel Lurgi; Johannes R Björk; Cole Easson; Carmen Astudillo-García; Julie B Olson; Patrick M Erwin; Susanna López-Legentil; Heidi Luter; Andia Chaves-Fonnegra; Rodrigo Costa; Peter J Schupp; Laura Steindler; Dirk Erpenbeck; Jack Gilbert; Rob Knight; Gail Ackermann; Jose Victor Lopez; Michael W Taylor; Robert W Thacker; Jose M Montoya; Ute Hentschel; Nicole S Webster
Journal:  Nat Commun       Date:  2016-06-16       Impact factor: 14.919

9.  The sponge microbiome within the greater coral reef microbial metacommunity.

Authors:  Daniel F R Cleary; Thomas Swierts; Francisco J R C Coelho; Ana R M Polónia; Yusheng M Huang; Marina R S Ferreira; Sumaitt Putchakarn; Luis Carvalheiro; Esther van der Ent; Jinn-Pyng Ueng; Newton C M Gomes; Nicole J de Voogd
Journal:  Nat Commun       Date:  2019-04-09       Impact factor: 14.919

10.  Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.

Authors:  Susan M Huse; Les Dethlefsen; Julie A Huber; David Mark Welch; David Mark Welch; David A Relman; Mitchell L Sogin
Journal:  PLoS Genet       Date:  2008-11-21       Impact factor: 5.917

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  1 in total

1.  Many Questions Remain Unanswered About the Role of Microbial Transmission in Epizootic Shell Disease in American Lobsters (Homarus americanus).

Authors:  Suzanne L Ishaq; Sarah M Turner; M Scarlett Tudor; Jean D MacRae; Heather Hamlin; Joelle Kilchenmann; Grace Lee; Deborah Bouchard
Journal:  Front Microbiol       Date:  2022-05-06       Impact factor: 5.640

  1 in total

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