Literature DB >> 34112695

Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein.

Stephan Tetter1, Naohiro Terasaka1, Angela Steinauer1, Richard J Bingham2, Sam Clark2, Andrew J P Scott3, Nikesh Patel3, Marc Leibundgut4, Emma Wroblewski3, Nenad Ban4, Peter G Stockley3, Reidun Twarock2, Donald Hilvert5.   

Abstract

Viruses are ubiquitous pathogens of global impact. Prompted by the hypothesis that their earliest progenitors recruited host proteins for virion formation, we have used stringent laboratory evolution to convert a bacterial enzyme that lacks affinity for nucleic acids into an artificial nucleocapsid that efficiently packages and protects multiple copies of its own encoding messenger RNA. Revealing remarkable convergence on the molecular hallmarks of natural viruses, the accompanying changes reorganized the protein building blocks into an interlaced 240-subunit icosahedral capsid that is impermeable to nucleases, and emergence of a robust RNA stem-loop packaging cassette ensured high encapsidation yields and specificity. In addition to evincing a plausible evolutionary pathway for primordial viruses, these findings highlight practical strategies for developing nonviral carriers for diverse vaccine and delivery applications.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2021        PMID: 34112695      PMCID: PMC7612296          DOI: 10.1126/science.abg2822

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  43 in total

1.  Physical principles in the construction of regular viruses.

Authors:  D L CASPAR; A KLUG
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1962

2.  Solving a Levinthal's paradox for virus assembly identifies a unique antiviral strategy.

Authors:  Eric C Dykeman; Peter G Stockley; Reidun Twarock
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-24       Impact factor: 11.205

Review 3.  3D domain swapping: a mechanism for oligomer assembly.

Authors:  M J Bennett; M P Schlunegger; D Eisenberg
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

Review 4.  Mechanisms of virus assembly.

Authors:  Jason D Perlmutter; Michael F Hagan
Journal:  Annu Rev Phys Chem       Date:  2014-12-17       Impact factor: 12.703

5.  Designed arginine-rich RNA-binding peptides with picomolar affinity.

Authors:  Ryan J Austin; Tianbing Xia; Jinsong Ren; Terry T Takahashi; Richard W Roberts
Journal:  J Am Chem Soc       Date:  2002-09-18       Impact factor: 15.419

Review 6.  The lumazine synthase/riboflavin synthase complex: shapes and functions of a highly variable enzyme system.

Authors:  Rudolf Ladenstein; Markus Fischer; Adelbert Bacher
Journal:  FEBS J       Date:  2013-04-24       Impact factor: 5.542

7.  The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.

Authors:  Miten Jain; Hugh E Olsen; Benedict Paten; Mark Akeson
Journal:  Genome Biol       Date:  2016-11-25       Impact factor: 13.583

8.  Gctf: Real-time CTF determination and correction.

Authors:  Kai Zhang
Journal:  J Struct Biol       Date:  2015-11-19       Impact factor: 2.867

9.  HBV RNA pre-genome encodes specific motifs that mediate interactions with the viral core protein that promote nucleocapsid assembly.

Authors:  Nikesh Patel; Simon J White; Rebecca F Thompson; Richard Bingham; Eva U Weiß; Daniel P Maskell; Adam Zlotnick; Eric Dykeman; Roman Tuma; Reidun Twarock; Neil A Ranson; Peter G Stockley
Journal:  Nat Microbiol       Date:  2017-06-19       Impact factor: 17.745

10.  Expanding the mass range for UVPD-based native top-down mass spectrometry.

Authors:  Jean-François Greisch; Sem Tamara; Richard A Scheltema; Howard W R Maxwell; Robert D Fagerlund; Peter C Fineran; Stephan Tetter; Donald Hilvert; Albert J R Heck
Journal:  Chem Sci       Date:  2019-07-01       Impact factor: 9.825

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  6 in total

1.  In vitro functional analysis of gRNA sites regulating assembly of hepatitis B virus.

Authors:  Nikesh Patel; Sam Clark; Eva U Weiß; Carlos P Mata; Jen Bohon; Erik R Farquhar; Daniel P Maskell; Neil A Ranson; Reidun Twarock; Peter G Stockley
Journal:  Commun Biol       Date:  2021-12-16

Review 2.  Methods for the directed evolution of biomolecular interactions.

Authors:  Victoria Cochran Xie; Matthew J Styles; Bryan C Dickinson
Journal:  Trends Biochem Sci       Date:  2022-05       Impact factor: 14.264

Review 3.  Bacterial Nanocompartments: Structures, Functions, and Applications.

Authors:  Harry Benjamin McDowell; Egbert Hoiczyk
Journal:  J Bacteriol       Date:  2021-10-04       Impact factor: 3.476

Review 4.  Virus-like particles against infectious disease and cancer: guidance for the nano-architect.

Authors:  Rory A Hills; Mark Howarth
Journal:  Curr Opin Biotechnol       Date:  2021-10-29       Impact factor: 9.740

Review 5.  The endoplasmic reticulum unfolded protein response - homeostasis, cell death and evolution in virus infections.

Authors:  Vibhu Prasad; Urs F Greber
Journal:  FEMS Microbiol Rev       Date:  2021-09-08       Impact factor: 16.408

Review 6.  RNA Structures and Their Role in Selective Genome Packaging.

Authors:  Liqing Ye; Uddhav B Ambi; Marco Olguin-Nava; Anne-Sophie Gribling-Burrer; Shazeb Ahmad; Patrick Bohn; Melanie M Weber; Redmond P Smyth
Journal:  Viruses       Date:  2021-09-08       Impact factor: 5.048

  6 in total

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