Literature DB >> 23451894

The underappreciated role of allostery in the cellular network.

Ruth Nussinov1, Chung-Jung Tsai, Buyong Ma.   

Abstract

Allosteric propagation results in communication between distinct sites in the protein structure; it also encodes specific effects on cellular pathways, and in this way it shapes cellular response. One example of long-range effects is binding of morphogens to cell surface receptors, which initiates a cascade of protein interactions that leads to genome activation and specific cellular action. Allosteric propagation results from combinations of multiple factors, takes place through dynamic shifts of conformational ensembles, and affects the equilibria of macromolecular interactions. Here, we (a) emphasize the well-known yet still underappreciated role of allostery in conveying explicit signals across large multimolecular assemblies and distances to specify cellular action; (b) stress the need for quantitation of the allosteric effects; and finally, (c) propose that each specific combination of allosteric effectors along the pathway spells a distinct function. The challenges are colossal; the inspiring reward will be predicting function, misfunction, and outcomes of drug regimes.

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Year:  2013        PMID: 23451894      PMCID: PMC6407633          DOI: 10.1146/annurev-biophys-083012-130257

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  63 in total

Review 1.  Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

Authors:  Shaoyong Lu; Hyunbum Jang; Shuo Gu; Jian Zhang; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2016-07-11       Impact factor: 54.564

Review 2.  Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine.

Authors:  Avishek Kumar; Brandon M Butler; Sudhir Kumar; S Banu Ozkan
Journal:  Curr Opin Struct Biol       Date:  2015-12-09       Impact factor: 6.809

3.  Mutations in Antibody Fragments Modulate Allosteric Response Via Hydrogen-Bond Network Fluctuations.

Authors:  Amit Srivastava; Malgorzata B Tracka; Shahid Uddin; Jose Casas-Finet; Dennis R Livesay; Donald J Jacobs
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

4.  Nanoscale protein domain motion and long-range allostery in signaling proteins- a view from neutron spin echo sprectroscopy.

Authors:  David J E Callaway; Zimei Bu
Journal:  Biophys Rev       Date:  2015-06

Review 5.  Regulation of RAF protein kinases in ERK signalling.

Authors:  Hugo Lavoie; Marc Therrien
Journal:  Nat Rev Mol Cell Biol       Date:  2015-05       Impact factor: 94.444

Review 6.  Detecting Allosteric Networks Using Molecular Dynamics Simulation.

Authors:  S Bowerman; J Wereszczynski
Journal:  Methods Enzymol       Date:  2016-06-20       Impact factor: 1.600

Review 7.  Disordered proteinaceous machines.

Authors:  Monika Fuxreiter; Ágnes Tóth-Petróczy; Daniel A Kraut; Andreas Matouschek; Andreas T Matouschek; Roderick Y H Lim; Bin Xue; Lukasz Kurgan; Vladimir N Uversky
Journal:  Chem Rev       Date:  2014-04-04       Impact factor: 60.622

8.  Peptide-MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC- and CD3-binding sites.

Authors:  Sneha Rangarajan; Yanan He; Yihong Chen; Melissa C Kerzic; Buyong Ma; Ragul Gowthaman; Brian G Pierce; Ruth Nussinov; Roy A Mariuzza; John Orban
Journal:  J Biol Chem       Date:  2018-08-22       Impact factor: 5.157

9.  Disordered allostery: lessons from glucocorticoid receptor.

Authors:  Hesam N Motlagh; Jeremy A Anderson; Jing Li; Vincent J Hilser
Journal:  Biophys Rev       Date:  2015-04-23

10.  Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.

Authors:  Gabrielle Stetz; Gennady M Verkhivker
Journal:  PLoS One       Date:  2015-11-30       Impact factor: 3.240

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