Literature DB >> 34099940

It's not just a phase: function and characteristics of RNA-binding proteins in phase separation.

Hannah J Wiedner1,2, Jimena Giudice3,4,5.   

Abstract

Biomolecular condensates that form via phase separation are increasingly regarded as coordinators of cellular reactions that regulate a wide variety of biological phenomena. Mounting evidence suggests that multiple steps of the RNA life cycle are organized within RNA-binding protein-rich condensates. In this Review, we discuss recent insights into the influence of phase separation on RNA biology, which has implications for basic cell biology, the pathogenesis of human diseases and the development of novel therapies.

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Year:  2021        PMID: 34099940      PMCID: PMC8787349          DOI: 10.1038/s41594-021-00601-w

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   18.361


  104 in total

1.  Germline P granules are liquid droplets that localize by controlled dissolution/condensation.

Authors:  Clifford P Brangwynne; Christian R Eckmann; David S Courson; Agata Rybarska; Carsten Hoege; Jöbin Gharakhani; Frank Jülicher; Anthony A Hyman
Journal:  Science       Date:  2009-05-21       Impact factor: 47.728

Review 2.  Coordinating cell cycle-regulated histone gene expression through assembly and function of the Histone Locus Body.

Authors:  Robert J Duronio; William F Marzluff
Journal:  RNA Biol       Date:  2017-01-06       Impact factor: 4.652

3.  A Membraneless Organelle Associated with the Endoplasmic Reticulum Enables 3'UTR-Mediated Protein-Protein Interactions.

Authors:  Weirui Ma; Christine Mayr
Journal:  Cell       Date:  2018-11-15       Impact factor: 41.582

4.  P-Body Purification Reveals the Condensation of Repressed mRNA Regulons.

Authors:  Arnaud Hubstenberger; Maïté Courel; Marianne Bénard; Sylvie Souquere; Michèle Ernoult-Lange; Racha Chouaib; Zhou Yi; Jean-Baptiste Morlot; Annie Munier; Magali Fradet; Maëlle Daunesse; Edouard Bertrand; Gérard Pierron; Julien Mozziconacci; Michel Kress; Dominique Weil
Journal:  Mol Cell       Date:  2017-09-28       Impact factor: 17.970

Review 5.  Alternative splicing as a regulator of development and tissue identity.

Authors:  Francisco E Baralle; Jimena Giudice
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-10       Impact factor: 94.444

Review 6.  Roles for RNA-binding proteins in development and disease.

Authors:  Amy E Brinegar; Thomas A Cooper
Journal:  Brain Res       Date:  2016-03-10       Impact factor: 3.252

Review 7.  The neurogenetics of alternative splicing.

Authors:  Celine K Vuong; Douglas L Black; Sika Zheng
Journal:  Nat Rev Neurosci       Date:  2016-05       Impact factor: 34.870

Review 8.  Properties of Stress Granule and P-Body Proteomes.

Authors:  Ji-Young Youn; Boris J A Dyakov; Jianping Zhang; James D R Knight; Robert M Vernon; Julie D Forman-Kay; Anne-Claude Gingras
Journal:  Mol Cell       Date:  2019-10-17       Impact factor: 17.970

9.  Concentrating pre-mRNA processing factors in the histone locus body facilitates efficient histone mRNA biogenesis.

Authors:  Deirdre C Tatomer; Esteban Terzo; Kaitlin P Curry; Harmony Salzler; Ivan Sabath; Grzegorz Zapotoczny; Daniel J McKay; Zbigniew Dominski; William F Marzluff; Robert J Duronio
Journal:  J Cell Biol       Date:  2016-05-30       Impact factor: 10.539

Review 10.  Nuclear speckles: molecular organization, biological function and role in disease.

Authors:  Lukasz Galganski; Martyna O Urbanek; Wlodzimierz J Krzyzosiak
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

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  19 in total

Review 1.  Regulation of spatially restricted gene expression: linking RNA localization and phase separation.

Authors:  Liam C O'Connell; Kimberly L Mowry
Journal:  Biochem Soc Trans       Date:  2021-12-17       Impact factor: 5.407

Review 2.  The solid and liquid states of chromatin.

Authors:  Jeffrey C Hansen; Kazuhiro Maeshima; Michael J Hendzel
Journal:  Epigenetics Chromatin       Date:  2021-10-30       Impact factor: 4.954

3.  APE1 assembles biomolecular condensates to promote the ATR-Chk1 DNA damage response in nucleolus.

Authors:  Jia Li; Haichao Zhao; Anne McMahon; Shan Yan
Journal:  Nucleic Acids Res       Date:  2022-10-14       Impact factor: 19.160

4.  Phase separation of HRLP regulates flowering time in Arabidopsis.

Authors:  Yu Zhang; Sheng Fan; Changmei Hua; Zhi Wei Norman Teo; Jian Xuan Kiang; Lisha Shen; Hao Yu
Journal:  Sci Adv       Date:  2022-06-22       Impact factor: 14.957

5.  The return of the rings: Evolutionary convergence of aromatic residues in the intrinsically disordered regions of RNA-binding proteins for liquid-liquid phase separation.

Authors:  Wen-Lin Ho; Jie-Rong Huang
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.993

Review 6.  Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription.

Authors:  Megan Palacio; Dylan J Taatjes
Journal:  J Mol Biol       Date:  2021-08-30       Impact factor: 5.469

Review 7.  Bioinformatic Tools for the Analysis and Prediction of ncRNA Interactions.

Authors:  Andrés Rincón-Riveros; Duvan Morales; Josefa Antonia Rodríguez; Victoria E Villegas; Liliana López-Kleine
Journal:  Int J Mol Sci       Date:  2021-10-22       Impact factor: 5.923

8.  The HIV-1 Nucleocapsid Regulates Its Own Condensation by Phase-Separated Activity-Enhancing Sequestration of the Viral Protease during Maturation.

Authors:  Sébastien Lyonnais; S Kashif Sadiq; Cristina Lorca-Oró; Laure Dufau; Sara Nieto-Marquez; Tuixent Escribà; Natalia Gabrielli; Xiao Tan; Mohamed Ouizougun-Oubari; Josephine Okoronkwo; Michèle Reboud-Ravaux; José Maria Gatell; Roland Marquet; Jean-Christophe Paillart; Andreas Meyerhans; Carine Tisné; Robert J Gorelick; Gilles Mirambeau
Journal:  Viruses       Date:  2021-11-19       Impact factor: 5.048

Review 9.  Molecular Mechanisms in Pentanucleotide Repeat Diseases.

Authors:  Joana R Loureiro; Ana F Castro; Ana S Figueiredo; Isabel Silveira
Journal:  Cells       Date:  2022-01-08       Impact factor: 6.600

10.  Editorial: The Role of Protein Post-Translational Modifications in Protein-RNA Interactions and RNP Assemblies.

Authors:  Roberto Giambruno; Ewa A Grzybowska; Nicolas L Fawzi; Dorothee Dormann
Journal:  Front Mol Biosci       Date:  2022-01-04
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