| Literature DB >> 34079337 |
Concetta Cafiero1, Felice Rosapepe2, Raffaele Palmirotta3, Agnese Re4, Maria Pia Ottaiano5, Giulio Benincasa6, Romina Perone7, Elisa Varriale8, Gerardo D'Amato9, Andrea Cacciamani10, Alessandra Micera10, Salvatore Pisconti1.
Abstract
INTRODUCTION: The renin-angiotensin-aldosterone system (RAAS), a metabolic cascade regulating pressure and circulating blood volume, has been considered the main system involved in the pathogenesis of severe lung injury and organs decline in COVID-19 patients. The angiotensin I-converting enzyme (ACE1), angiotensin-converting enzyme 2 (ACE2), angiotensinogen (AGT) and receptors angiotensin II receptor type 1 (AGTR1) are key factors for SARS-CoV-2 entering in the cells, sodium and water retention with an increase blood pressure, promotion of fibrotic and inflammatory phenomena resulting in a cytokine storm.Entities:
Keywords: ACE; AGT; AGTR1; COVID-19; RAAS; SARS-CoV-2; asymptomatic; polymorphisms
Year: 2021 PMID: 34079337 PMCID: PMC8166347 DOI: 10.2147/PGPM.S303666
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
Comparison Between Allele Frequencies Obtained from the Genotyping of Our Study and the Allele Frequency Data Available from the 1000 Genomes and GnomAD Databases
| Alleles (%) | 1000 Genomes Project Phase 3 Global Population | 1000 Genomes Project Phase 3 European Population | GnomAD Genomes r3.0 Global Population | Total 104 Patients % | P value* | |
|---|---|---|---|---|---|---|
| C | 63.7 | 57 | 59.8 | 66.3 | 0.77–0.19–0.38 | |
| T | 36.3 | 43 | 40.2 | 33.7 | ||
| A | 68.4 | 75 | 80.6 | 78.4 | 0.11–0.62–0.60 | |
| G | 31.6 | 25 | 19.4 | 21.6 | ||
| I | 41.4# | 45.2 | 0.57# | |||
| D | 58.6# | 54.8 | ||||
| C | 89.8 | 87 | 88.9 | 84.6 | 0.28–0.68–0.4 | |
| T | 10.2 | 13 | 11.1 | 15.4 | ||
| T | 29.5 | 59 | 42.2 | 61.6 | <0.00001–0.14–0.006877 | |
| C | 70.5 | 41 | 57.8 | 38.4 | ||
| A | 88.2 | 73 | 77.3 | 77.9 | 0.06–0.41–0.86 | |
| C | 11.8 | 27 | 22.7 | 22.1 | ||
Notes: *P values relative to the comparison with 1000 Genomes Project Phase 3 global population, 1000 Genomes Project Phase 3 European population and GnomAD genomes r3.0 global population respectively. #P values relative to the comparison with mutational data obtained in a previous study on 825 Italian subjects.16
Distributions of Genotype and Allele Frequencies of SNPs rs2074192, rs2106809, rs1799752, rs4762, rs699 and rs5186 Observed in Asymptomatic and Symptomatic Patients
| Asymptomatic (n=50) | Symptomatic (n=54) | |||
|---|---|---|---|---|
| Genotypes (%) | C/C | 28 (56) | 27 (50) | |
| C/T | 21 (42) | 7 (13) | ||
| T/T | 1 (2) | 20 (37) | ||
| Alleles (%) | C | 77 (77) | 61 (56) | |
| T | 23 (23) | 47 (44) | ||
| HW (p) females | 0.37 | 0.0088 | ||
| HW (p) males | 0.13 | <0.0001 | ||
| Genotypes (%) | A/A | 38 (76) | 40 (74) | |
| A/G | 4 (8) | 3 (6) | ||
| G/G | 8 (16) | 11 (20) | ||
| Alleles (%) | A | 80 (80) | 83 (77) | |
| G | 20 (20) | 25 (23) | ||
| HW (p) females | 0.27 | 0.076 | ||
| HW (p) males | <0.0001 | <0.0001 | ||
| Genotypes (%) | I/I | 22(44) | 7(13) | |
| I/D | 21(42) | 15(28) | ||
| D/D | 7(14) | 32(59) | ||
| Alleles (%) | I | 65(65) | 29(27) | |
| D | 35 (35) | 79(73) | ||
| HW (p) | 0.55 | 0.037 | ||
| Genotypes (%) | C/C | 35 (70) | 38 (70) | |
| C/T | 14 (28) | 16 (30) | ||
| T/T | 1 (2) | 0 (0) | ||
| Alleles (%) | C | 84 (84) | 92 (85) | |
| T | 16 (16) | 16 (15) | ||
| HW (p) | 1 | 0.58 | ||
| Genotypes (%) | T/T | 19 (38) | 17 (31) | |
| T/C | 31 (62) | 25 (46) | ||
| C/C | 0 (0) | 12 (22) | ||
| Alleles (%) | T | 69 (69) | 59 (55) | |
| C | 31 (31) | 49 (45) | ||
| HW (p) | 0.0018 | 0.59 | ||
| Genotypes (%) | A/A | 27 (54) | 35 (65) | |
| A/C | 21 (42) | 17 (31) | ||
| C/C | 2 (4) | 2 (4) | ||
| Alleles (%) | A | 75 (75) | 87 (81) | |
| C | 25 (25) | 21 (19) | ||
| HW (p) | 0.7 | 1 |
Notes: For each polymorphism the relative gene, chromosomal position, nucleotide variant and amino acid consequence are described.
Abbreviations: D, deletion; HWE, Hardy–Weinberg equilibrium; I, insertion.
Haplotype Analysis Performed on rs2074192, rs1799752 and rs699 SNPs and Their Corresponding Frequencies in Asymptomatic (N= 50) and Symptomatic (N= 54) Patients
| Haplotypes | Frequency | |||||||
|---|---|---|---|---|---|---|---|---|
| rs2074192 | rs1799752 | rs699 | Total | Asymptomatic | Symptomatic | Cumulative | ||
| 20.35 | 18.43 | 22.65 | 20.35 | 0.563 | 0.453054 | |||
| 19.44 | 36.7 | 6.27 | 39.79 | 29.067 | ||||
| 13.41 | 12.08 | 16.20 | 53.20 | 0.726 | 0.394183 | |||
| 13.15 | 9.79 | 11.36 | 66.35 | 0.133 | 0.715342 | |||
| 12.43 | 4.49 | 19.22 | 78.77 | 10.558 | ||||
| 9.32 | 9.13 | 2.73 | 88.10 | 3.882 | ||||
| 8.62 | 0 | 15.08 | 96.71 | 16.360 | ||||
| 3.29 | 9.37 | 6.49 | 100 | 0.598 | 0.439342 | |||
Note: Comparisons were carried out with χ2 analysis and a P value ≤ 0.05 was considered significant (see bold values in the column).
Abbreviations: D, deletion; I, insertion.