| Literature DB >> 35432458 |
João Locke Ferreira de Araújo1, Diego Menezes1, Renato Santana de Aguiar1, Renan Pedra de Souza1.
Abstract
Human polymorphisms may contribute to SARS-CoV-2 infection susceptibility and COVID-19 outcomes (asymptomatic presentation, severe COVID-19, death). We aimed to evaluate the association of IFITM3, FURIN, ACE1, and TNF-α genetic variants with both phenotypes using meta-analysis. The bibliographic search was conducted on the PubMed and Scielo databases covering reports published until February 8, 2022. Two independent researchers examined the study quality using the Q-Genie tool. Using the Mantel-Haenszel weighted means method, odds ratios were combined under both fixed- and random-effect models. Twenty-seven studies were included in the systematic review (five with IFITM3, two with Furin, three with TNF-α, and 17 with ACE1) and 22 in the meta-analysis (IFITM3 n = 3, TNF-α, and ACE1 n = 16). Meta-analysis indicated no association of 1) ACE1 rs4646994 and susceptibility, 2) ACE1 rs4646994 and asymptomatic COVID-19, 3) IFITM3 rs12252 and ICU hospitalization, and 4) TNF-α rs1800629 and death. On the other hand, significant results were found for ACE1 rs4646994 association with COVID-19 severity (11 studies, 692 severe cases, and 1,433 nonsevere controls). The ACE1 rs4646994 deletion allele showed increased odds for severe manifestation (OR: 1.45; 95% CI: 1.26-1.66). The homozygous deletion was a risk factor (OR: 1.49, 95% CI: 1.22-1.83), while homozygous insertion presented a protective effect (OR: 0.57, 95% CI: 0.45-0.74). Further reports are needed to verify this effect on populations with different ethnic backgrounds. Systematic Review Registration: https://www.crd.york.ac.uk/prosperodisplay_record.php?ID=CRD42021268578, identifier CRD42021268578.Entities:
Keywords: biomarkers; candidate genes; genetic association study; host genetics; polymorphism; transposable elements
Year: 2022 PMID: 35432458 PMCID: PMC9010674 DOI: 10.3389/fgene.2022.775246
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Study selection using Preferred Reporting Items for Systematic reviews and Meta-analysis (PRISMA) guidelines (16).
Association studies of ACE1 rs4646994 (Alu 287 pb) with coronavirus disease 2019 (COVID-19) susceptibility included in the systematic review.
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| 2020 | Gòmez | — | Spain | Caucasian (Asturias) | 740 | 373 (0.50) | 536 | Healthy population | 204 | COVID-19 positive |
| 2021 | Akbari | 2020 | Iran | — | 182 | 105 (0.57) | 91 | Unaffected individuals without a history of exposure to COVID-19 cases | 91 | COVID-19 positive |
| Aladag | May/2020 | Turkey | — | 412 | — | 300 | General population | 112 | COVID-19 positive | |
| Annunziata | March–April/20 | Italy | Southern Italians | 39 | — | 19 | Healthy subjects | 20 | COVID-19 positive | |
| Hubacek | March–June/2020 | Czech Republic | — | 2,989 | −(0.54) | 2,579 | General population | 408 | COVID-19 positive | |
| Kouhpayeh | May–September/2020 | Iran | — | 520 | 276 (0.55) | 258 | Healthy subjects with negative PCR and clinical diagnostic criteria | 244 | COVID-19 positive | |
| Mahmood | October–December/2020 | Iraq | — | 195 | −(0.50) | 96 | Healthy subjects with negative serological test | 99 | COVID-19 positive | |
| Mir | September/2020–April/2021 | Saudi Arabia | — | 267 | 185 (0.69) | 150 | Healthy subjects | 117 | COVID-19 positive | |
| Möhlendick | March–September/2020 | Germany | — | 550 | 323 (0.59) | 253 | Patients with COVID-19 symptoms with negative PCR | 297 | COVID-19 positive | |
| Saad | — | Lebanon | Lebanese | 387 | 195 (0.50) | 155 | Participants with negative PCR | 232 | COVID-19 positive | |
| 2022 | Gong | January–March/2020 | China | — | 862 | — | 441 | Healthy subjects | 421 | COVID-19 positive |
| Papadopoulou | March–June/2020 | Greece | Caucasian (Greek) | 389 | — | 316 | Blood product donors and volunteer healthcare workers | 73 | COVID-19 positive | |
FIGURE 2Forest plot illustrating ACE1 rs4646994 (Alu 287 pb) association with coronavirus disease 2019 (COVID-19) susceptibility. No significant results were observed. Case and control definitions are presented in Table 1. (A) C allele association. (B) C recessive model. (C) T recessive model.
Association studies of ACE1 rs4646994 (Alu 287 pb) with COVID-19 prognosis included in the systematic review.
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| Asymptomatic × symptomatic | 2021 | Cafiero | — | Italy | — | 104 | 58 (0.56) | 50 | Asymptomatic | 54 | Symptomatic (x-ray imaging) |
| Hubacek | March–June/2020 | Czech Republic | — | 408 | −(0.55) | 163 | Asymptomatic | 245 | Symptomatic (no hospitalization) | ||
| Gunal | April–July/2020 | Turkey | — | 60 | — | 30 | Asymptomatic | 30 | Severe (RR ≥30/min; SpO2 ≤93%; PaO2/FiO2 ≤300 mmHg; mechanical ventilation or ICU) | ||
| Nonsevere × severe | 2020 | Gòmez | — | Spain | Caucasian (Asturias) | 204 | 125 (0.61) | 137 | Mild (hospitalized, nonsevere) | 67 | Severe (hospitalized, mechanical ventilation and/or ICU) |
| 2021 | Akbari | 2020 | Iran | — | 91 | 53 (0.58) | 54 | Hospitalized, non-ICU | 37 | Hospitalized, ICU | |
| Aladag | May/2020 | Turkey | — | 65 | - | 53 | Nonsevere | 12 | Severe (fever or suspected respiratory infection, plus one of the following: RR >30/min; severe respiratory distress; or SpO2 ≤93%) | ||
| Çelik | — | Turkey | — | 154 | 78 (0.50) | 119 | Mild (outpatients) and moderate (hospitalized nonsevere) | 35 | Severe (RR ≥30/min; SpO2 ≤93%; PaO2/FiO2 ≤300 mmHg; mechanical ventilation or ICU) | ||
| Gunal | April–July/2020 | Turkey | — | 90 | - | 60 | Asymptomatic and mild | 30 | Severe (RR ≥30/min; SpO2 ≤93%; PaO2/FiO2 ≤300 mmHg; mechanical ventilation or ICU) | ||
| Kouhpayeh | May–September/2020 | Iran | — | 258 | 144 (0.56) | 106 | Nonsevere | 152 | Severe (fever or suspected respiratory infection, plus one of the following: RR >30/min; severe respiratory distress; or SpO2 ≤93%) | ||
| Mahmood | October–December/2020 | Iraq | — | 99 | −(0.51) | 68 | Mild (with symptoms of pneumonia and no signs of severe pneumonia) | 31 | Severe (severe respiratory distress, RR ≥30 breaths/min or SpO2 ≤ 93%) | ||
| Möhlendick | March–September/2020 | Germany | — | 251 | 176 (0.59) | 207 | Mild and hospitalized (non-ICU) | 44 | Severe (hospitalized, mechanical ventilation and/or ICU) | ||
| Saad | - | Lebanon | Lebanese | 223 | 123 (0.55) | 162 | Mild and moderate | 61 | Severe (lung infiltrates on chest x-ray or CT scan and SpO2 <94% who required hospitalization with essential oxygen therapy or mechanical ventilation) | ||
| Verma | August–September/2020 | India | India | 269 | 174 (0.65) | 149 | Mild (RR <24/min, SpO2 >94%) | 120 | Severe (pneumonia with RR > 30/min; severe respiratory distress; or SpO2 ≤93%) | ||
| 2022 | Gong | January–March/2020 | China | — | 421 | — | 318 | Mild and moderate | 103 | Severe | |
| Papadopoulou | March–June/2020 | Greece | Caucasian (Greek) | 81 | 43 (0.53) | 29 | Mild and moderate (with symptoms of pneumonia and no signs of severe pneumonia) | 52 | Severe or critical (fever or suspected respiratory infection, plus one of the following: RR >30/min; severe respiratory distress; or SpO2 ≤93%) | ||
| Alive × dead | 2021 | Mir | September/2020–April/2021 | Saudi Arabia | — | 117 | 85 (0.73) | 74 | Alive | 43 | Dead |
| Möhlendick | March–September/2020 | Germany | — | 297 | 176 (0.59) | 251 | Mild, hospitalized (non-ICU) and severe | 46 | Dead | ||
Note. RR, respiratory rate; ICU, intensive care unit; SpO2, oxygen saturation; PaO2/FiO2, arterial oxygen pressure/fraction of inspired oxygen; CT, computerized tomography.
FIGURE 3Forest plot illustrating ACE1 rs4646994 (Alu 287 pb) association with symptom presence (asymptomatic × symptomatic). No significant allelic and genotypic effects were observed under the random model. Case and control definitions are presented in Table 2. (A) D-allele model. (B) D recessive model. (C) I recessive model.
FIGURE 4Forest plot illustrating ACE1 rs4646994 (Alu 287 pb) association with COVID-19 severity (severe × others). Significant allelic and genotypic effects were observed. Case and control definitions are presented in Table 2. (A) D-allele model. D-allele was associated with increased risk of COVID-19 severity. (B) D recessive model. D/D genotype carriers showed increased odds to manifest severe COVID-19 compared with D/I and I/I carriers combined (C) I recessive model. I/I genotype carriers showed decreased odds to present severe COVID-19 compared with D/I and D/D carriers combined.
Association studies of IFITM3 rs12252 with COVID-19 prognosis included in the systematic review.
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| Non-ICU × ICU | 2021 | Alghamdi | — | Saudi Arabia | Saudi | 376 | 112 (0.56) | 210 | Hospitalized, non-ICU | 166 | Hospitalized, ICU |
| 2021 | Cuesta-Llavona | March–December/2020 | Spain | Caucasian (Asturias) | 484 | 276 (0.57) | 332 | Hospitalized, non-ICU | 152 | Hospitalized, ICU | |
| 2021 | Gómez | March–August/2020 | Not informed | Caucasian (Asturias) | 311 | 174 (0.56) | 230 | Hospitalized, non-ICU | 81 | Hospitalized, ICU | |
| 2021 | Schonfelder | March–September/2020 | Germany | Caucasian | 239 | 141 (0.59) | 164 | Outpatients and hospitalized (non-ICU) | 75 | Hospitalized (ICU or mechanical ventilation) or dead | |
| Alive × dead | 2021 | Alghamdi | — | Saudi Arabia | Saudi | 861 | — | 784 | Alive | 77 | Dead |
| 2021 | Cuesta-Llavona | March–December/2020 | Spain | Caucasian (Asturias) | 484 | 276 (0.57) | 114 | Alive | 38 | Dead | |
| Other | 2020 | Zhang | January–February/2020 | China | — | 80 | 33 (0.41) | 56 | Mild (hospitalized with fever, respiratory symptoms, and pneumonia seen with imaging) | 24 | Severe (RR ≥30/min; SpO2 ≤93%; PaO2/FiO2 ≤300 mmHg; mechanical ventilation or ICU) |
| 2021 | Alghamdi | — | Saudi Arabia | Saudi | 861 | — | 457 | Nonhospitalized | 374 | Hospitalized | |
Note. RR, respiratory rate; ICU, intensive care unit; SpO2, oxygen saturation; PaO2/FiO2, arterial oxygen pressure/fraction of inspired oxygen.
FIGURE 5Forest plot illustrating IFITM3 rs12252 association with severity (non-ICU × ICU). No significant results were observed. Case and control definitions are presented in Table 3. (A) C allele association. (B) C recessive model. (C) T recessive model.
Association studies of TNF-α rs1800629 gene with COVID-19 prognosis or susceptibility included in the systematic review.
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| 2020 | Saleh | April—July/2020 | Egypt | — | 1,084 | 600 (0.56) | 184 | Health care workers | 900 | COVID-19 positive |
| 900 | - | 444 | Mild | 456 | Severe | |||||
| 900 | 504 (0.56) | 840 | Alive | 60 | Dead | |||||
| 2021 | Nia | June/2020—January/2021 | Iran | — | 550 | 234 (0.43) | 275 | COVID-19 negative | 275 | Hospitalized |
| 275 | 112 (0.41) | 96 | Nonsevere | 179 | Severe | |||||
| 275 | - | 249 | Alive | 26 | Dead | |||||
| 2021 | Fishchuk | April–June/2020 | Ukraine | — | 31 | 16 (0.50) | 25 | Alive | 6 | Dead |
FIGURE 6Forest plot illustrating TNF-α rs1800629 association with death (alive × dead). No significant results were observed under the random model. Case and control definitions are presented in Table 5. (A) C allele association. (B) C recessive model. (C) T recessive model.
Association studies of FURIN gene with COVID-19 prognosis or susceptibility included in the systematic review.
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| 2020 | Latini | Mar—May/2020 | Italy | — | — | — | — | Severe (respiratory impairment, requiring noninvasive ventilation) | — | Extremely severe (requiring invasive ventilation and ICU) |
| 131 | 82 (0.63) | — | Asymptomatic | — | Severe and extremely severe | |||||
| 2021 | Torre-Fuentes | — | Spain | — | 120 | - | 113 | COVID-19 negative | 7 | COVID-19 positive |