Literature DB >> 34074791

Single-molecule calorimeter and free energy landscape.

Yi Wang1, Zhuodong Tang1, Hong-Yuan Chen1, Wei Wang1, Nongjian Tao2,3, Hui Wang4.   

Abstract

The precise measurement of thermodynamic and kinetic properties for biomolecules provides the detailed information for a multitude of applications in biochemistry, biosensing, and health care. However, sensitivity in characterizing the thermodynamic binding affinity down to a single molecule, such as the Gibbs free energy ([Formula: see text]), enthalpy ([Formula: see text]), and entropy ([Formula: see text]), has not materialized. Here, we develop a nanoparticle-based technique to probe the energetic contributions of single-molecule binding events, which introduces a focused laser of optical tweezer to an optical path of plasmonic imaging to accumulate and monitor the transient local heating. This single-molecule calorimeter uncovers the complex nature of molecular interactions and binding characterizations, which can be employed to identify the thermodynamic equilibrium state and determine the energetic components and complete thermodynamic profile of the free energy landscape. This sensing platform promises a breakthrough in measuring thermal effect at the single-molecule level and provides a thorough description of biomolecular specific interactions.

Keywords:  complete thermodynamic profile; optical tweezer; plasmonic imaging; single-molecule calorimeter

Year:  2021        PMID: 34074791      PMCID: PMC8201985          DOI: 10.1073/pnas.2104598118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).

Authors:  Michael J Rust; Mark Bates; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2006-08-09       Impact factor: 28.547

2.  Whispering-gallery-mode biosensing: label-free detection down to single molecules.

Authors:  Frank Vollmer; Stephen Arnold
Journal:  Nat Methods       Date:  2008-07       Impact factor: 28.547

3.  Measuring surface charge density and particle height using surface plasmon resonance technique.

Authors:  Xiaonan Shan; Xinping Huang; Kyle J Foley; Peiming Zhang; Kangping Chen; Shaopeng Wang; Nongjian Tao
Journal:  Anal Chem       Date:  2010-01-01       Impact factor: 6.986

4.  Interferometric plasmonic imaging and detection of single exosomes.

Authors:  Yuting Yang; Guangxia Shen; Hui Wang; Hongxia Li; Ting Zhang; Nongjian Tao; Xianting Ding; Hui Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-24       Impact factor: 11.205

5.  Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry.

Authors:  Xinghua Zhang; Hu Chen; Shimin Le; Ioulia Rouzina; Patrick S Doyle; Jie Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-19       Impact factor: 11.205

Review 6.  Exploring bacterial cell biology with single-molecule tracking and super-resolution imaging.

Authors:  Andreas Gahlmann; W E Moerner
Journal:  Nat Rev Microbiol       Date:  2014-01       Impact factor: 60.633

7.  Quantitative mass imaging of single biological macromolecules.

Authors:  Gavin Young; Nikolas Hundt; Daniel Cole; Adam Fineberg; Joanna Andrecka; Andrew Tyler; Anna Olerinyova; Ayla Ansari; Erik G Marklund; Miranda P Collier; Shane A Chandler; Olga Tkachenko; Joel Allen; Max Crispin; Neil Billington; Yasuharu Takagi; James R Sellers; Cédric Eichmann; Philipp Selenko; Lukas Frey; Roland Riek; Martin R Galpin; Weston B Struwe; Justin L P Benesch; Philipp Kukura
Journal:  Science       Date:  2018-04-27       Impact factor: 47.728

8.  Conformation switching of single native proteins revealed by nanomechanical probing without a pulling force.

Authors:  Fabiola A Gutiérrez-Mejía; Christian P Moerland; Leo J van IJzendoorn; Menno W J Prins
Journal:  Nanoscale       Date:  2019-10-10       Impact factor: 7.790

9.  Plasmonic Measurement of Electron Transfer between a Single Metal Nanoparticle and an Electrode through a Molecular Layer.

Authors:  Ruihong Liu; Xiaonan Shan; Hui Wang; Nongjian Tao
Journal:  J Am Chem Soc       Date:  2019-07-10       Impact factor: 15.419

10.  High-throughput single-molecule analysis of DNA-protein interactions by tethered particle motion.

Authors:  Thomas Plénat; Catherine Tardin; Philippe Rousseau; Laurence Salomé
Journal:  Nucleic Acids Res       Date:  2012-03-15       Impact factor: 16.971

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  3 in total

1.  Label-Free Imaging of Nanoscale Displacements and Free-Energy Profiles of Focal Adhesions with Plasmonic Scattering Microscopy.

Authors:  Pengfei Zhang; Xinyu Zhou; Rui Wang; Jiapei Jiang; Zijian Wan; Shaopeng Wang
Journal:  ACS Sens       Date:  2021-10-28       Impact factor: 7.711

2.  In Situ Analysis of Membrane-Protein Binding Kinetics and Cell-Surface Adhesion Using Plasmonic Scattering Microscopy.

Authors:  Pengfei Zhang; Xinyu Zhou; Jiapei Jiang; Jayeeta Kolay; Rui Wang; Guangzhong Ma; Zijian Wan; Shaopeng Wang
Journal:  Angew Chem Int Ed Engl       Date:  2022-08-23       Impact factor: 16.823

3.  Evanescent scattering imaging of single protein binding kinetics and DNA conformation changes.

Authors:  Pengfei Zhang; Lei Zhou; Rui Wang; Xinyu Zhou; Jiapei Jiang; Zijian Wan; Shaopeng Wang
Journal:  Nat Commun       Date:  2022-04-28       Impact factor: 17.694

  3 in total

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