Literature DB >> 24336182

Exploring bacterial cell biology with single-molecule tracking and super-resolution imaging.

Andreas Gahlmann1, W E Moerner1.   

Abstract

The ability to detect single molecules in live bacterial cells enables us to probe biological events one molecule at a time and thereby gain knowledge of the activities of intracellular molecules that remain obscure in conventional ensemble-averaged measurements. Single-molecule fluorescence tracking and super-resolution imaging are thus providing a new window into bacterial cells and facilitating the elucidation of cellular processes at an unprecedented level of sensitivity, specificity and spatial resolution. In this Review, we consider what these technologies have taught us about the bacterial cytoskeleton, nucleoid organization and the dynamic processes of transcription and translation, and we also highlight the methodological improvements that are needed to address a number of experimental challenges in the field.

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Year:  2014        PMID: 24336182      PMCID: PMC3934628          DOI: 10.1038/nrmicro3154

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  137 in total

1.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

2.  Single-molecule DNA repair in live bacteria.

Authors:  Stephan Uphoff; Rodrigo Reyes-Lamothe; Federico Garza de Leon; David J Sherratt; Achillefs N Kapanidis
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

Review 3.  Generating and exploiting polarity in bacteria.

Authors:  Lucy Shapiro; Harley H McAdams; Richard Losick
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

4.  Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function.

Authors:  Grant R Bowman; Luis R Comolli; Guido M Gaietta; Michael Fero; Sun-Hae Hong; Ying Jones; Julie H Lee; Kenneth H Downing; Mark H Ellisman; Harley H McAdams; Lucy Shapiro
Journal:  Mol Microbiol       Date:  2010-02-10       Impact factor: 3.501

5.  Translation-independent localization of mRNA in E. coli.

Authors:  Keren Nevo-Dinur; Anat Nussbaum-Shochat; Sigal Ben-Yehuda; Orna Amster-Choder
Journal:  Science       Date:  2011-02-25       Impact factor: 47.728

6.  MreB drives de novo rod morphogenesis in Caulobacter crescentus via remodeling of the cell wall.

Authors:  Constantin N Takacs; Sebastian Poggio; Godefroid Charbon; Mathieu Pucheault; Waldemar Vollmer; Christine Jacobs-Wagner
Journal:  J Bacteriol       Date:  2009-12-18       Impact factor: 3.490

Review 7.  FtsZ ring stability: of bundles, tubules, crosslinks, and curves.

Authors:  Kuo-Hsiang Huang; Jorge Durand-Heredia; Anuradha Janakiraman
Journal:  J Bacteriol       Date:  2013-03-01       Impact factor: 3.490

8.  Enzymatic activation of nitro-aryl fluorogens in live bacterial cells for enzymatic turnover-activated localization microscopy†

Authors:  Marissa K Lee; Jarrod Williams; Robert J Twieg; Jianghong Rao; W E Moerner
Journal:  Chem Sci       Date:  2013       Impact factor: 9.825

9.  Photoactivatable mCherry for high-resolution two-color fluorescence microscopy.

Authors:  Fedor V Subach; George H Patterson; Suliana Manley; Jennifer M Gillette; Jennifer Lippincott-Schwartz; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2009-01-25       Impact factor: 28.547

10.  Genetic Encoding of bicyclononynes and trans-cyclooctenes for site-specific protein labeling in vitro and in live mammalian cells via rapid fluorogenic Diels-Alder reactions.

Authors:  Kathrin Lang; Lloyd Davis; Stephen Wallace; Mohan Mahesh; Daniel J Cox; Melissa L Blackman; Joseph M Fox; Jason W Chin
Journal:  J Am Chem Soc       Date:  2012-06-13       Impact factor: 15.419

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  69 in total

Review 1.  Up against the wall: is yeast cell wall integrity ensured by mechanosensing in plasma membrane microdomains?

Authors:  Christian Kock; Yves F Dufrêne; Jürgen J Heinisch
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

Review 2.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

3.  Chromosomal locus tracking with proper accounting of static and dynamic errors.

Authors:  Mikael P Backlund; Ryan Joyner; W E Moerner
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-06-29

4.  Resolving Cytosolic Diffusive States in Bacteria by Single-Molecule Tracking.

Authors:  Julian Rocha; Jacqueline Corbitt; Ting Yan; Charles Richardson; Andreas Gahlmann
Journal:  Biophys J       Date:  2019-04-09       Impact factor: 4.033

Review 5.  Rethinking resolution estimation in fluorescence microscopy: from theoretical resolution criteria to super-resolution microscopy.

Authors:  Mengting Li; Zhen-Li Huang
Journal:  Sci China Life Sci       Date:  2020-12-01       Impact factor: 6.038

6.  An Introduction to Fluorescence in situ Hybridization in Microorganisms.

Authors:  Carina Almeida; Nuno F Azevedo
Journal:  Methods Mol Biol       Date:  2021

7.  Unraveling the Thousand Word Picture: An Introduction to Super-Resolution Data Analysis.

Authors:  Antony Lee; Konstantinos Tsekouras; Christopher Calderon; Carlos Bustamante; Steve Pressé
Journal:  Chem Rev       Date:  2017-04-17       Impact factor: 60.622

8.  Reduction of Confinement Error in Single-Molecule Tracking in Live Bacterial Cells Using SPICER.

Authors:  Christopher H Bohrer; Kelsey Bettridge; Jie Xiao
Journal:  Biophys J       Date:  2017-02-28       Impact factor: 4.033

9.  Diffusion Tensor Analysis by Two-Dimensional Pair Correlation of Fluorescence Fluctuations in Cells.

Authors:  Carmine Di Rienzo; Francesco Cardarelli; Mariagrazia Di Luca; Fabio Beltram; Enrico Gratton
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

10.  Single-molecule dynamics of the molecular chaperone trigger factor in living cells.

Authors:  Feng Yang; Tai-Yen Chen; Łukasz Krzemiński; Ace George Santiago; Won Jung; Peng Chen
Journal:  Mol Microbiol       Date:  2016-09-30       Impact factor: 3.501

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