| Literature DB >> 34063695 |
Jungeun Won1,2, Guillermo L Monroy2, Roshan I Dsouza2, Darold R Spillman2, Jonathan McJunkin3,4, Ryan G Porter3,4, Jindou Shi2,5, Edita Aksamitiene2, MaryEllen Sherwood6, Lindsay Stiger6, Stephen A Boppart1,2,4,5.
Abstract
A middle ear infection is a prevalent inflammatory disease most common in the pediatric population, and its financial burden remains substantial. Current diagnostic methods are highly subjective, relying on visual cues gathered by an otoscope. To address this shortcoming, optical coherence tomography (OCT) has been integrated into a handheld imaging probe. This system can non-invasively and quantitatively assess middle ear effusions and identify the presence of bacterial biofilms in the middle ear cavity during ear infections. Furthermore, the complete OCT system is housed in a standard briefcase to maximize its portability as a diagnostic device. Nonetheless, interpreting OCT images of the middle ear more often requires expertise in OCT as well as middle ear infections, making it difficult for an untrained user to operate the system as an accurate stand-alone diagnostic tool in clinical settings. Here, we present a briefcase OCT system implemented with a real-time machine learning platform for middle ear infections. A random forest-based classifier can categorize images based on the presence of middle ear effusions and biofilms. This study demonstrates that our briefcase OCT system coupled with machine learning can provide user-invariant classification results of middle ear conditions, which may greatly improve the utility of this technology for the diagnosis and management of middle ear infections.Entities:
Keywords: biofilms; handheld; machine learning; middle ear infections; optical coherence tomography; tympanic membrane
Mesh:
Year: 2021 PMID: 34063695 PMCID: PMC8147830 DOI: 10.3390/bios11050143
Source DB: PubMed Journal: Biosensors (Basel) ISSN: 2079-6374
Figure 1A schematic diagram of the ML-integrated, handheld briefcase OCT system. Data acquisition and processing are performed using a standard laptop. DG: diffraction grating; PC: polarization controller; RR: retroreflector; DAQ: data acquisition system; DM: dichroic mirror to spectrally separate light; CCD: charge-coupled device for simultaneous otoscopy.
Figure 2Photos of the complete ML-integrated briefcase system for ear imaging. (a) All components including associated optics, 3D-printed handheld probe and laptop fit into a standard briefcase; (b) briefcase system in an exam room for translational middle ear imaging; (c) a pocket stores the laptop during transport, and a lid protects the optical system from damage; (d) detailed view of the handheld probe with a disposable ear speculum and trigger buttons; (e) closed briefcase system with a standard coffee mug for size comparison. SPECT: spectrometer; IC: illumination circuit for a halogen lamp; REF: a reference arm that allows light to travel for a fixed distance in OCT; SLD: superluminescent diode; PC: polarization controller; DAQ: data acquisition system.
Figure 3Processing flow and representative output of the ML-integrated briefcase system. (a) Step-by-step illustration of image acquisition, processing and feeding to the ML classifier; (b) representative OCT image showing complete dataset: during free-run and the post-triggered data (250 A-scans) sent to the real-time ML classifier; (c) output display of the classifier; (d) simultaneously acquired surface image of the TM labeled with major anatomical landmarks.
Figure 4Side-by-side comparisons of middle ear images acquired from the high-end OCT system and the briefcase system. (a,b) Representative high-resolution digital otoscopy (white dotted line—the scanning region of the high-end OCT; circles—the focus of the briefcase OCT from the three different users), high-end OCT images and briefcase OCT images of the healthy middle ear; (c) overlaid box plots of the TM thickness measured from the briefcase (blue) and the high-end OCT system (black); (d) bar graphs comparing the user variability in TM thickness measured from the briefcase system. Each statistical comparison is shown in Supplementary Information Table S1.
Figure 5ML classified results between users with different levels of experience. (a) Representative briefcase images of three healthy ears with simultaneous otoscopy (inset; red circle and white arrow indicate the focusing beam and light reflex, respectively) and the ML-classified results on the top bar; (b) box plot of the real-time classification results during imaging; (c) box plot of the classification results after post-processing the entire dataset.
Figure 6ML-briefcase OCT measurements from subjects clinically diagnosed with OM. (a) Representative results from a normal middle ear for comparison; (b) results from a subject diagnosed with OME, where most regions were classified as ‘Abnormal’ (containing effusion with biofilm); (c) results from a subject in which her left ear was diagnosed with chronic OME, and OCT detected additional structures behind the TM (white arrows); (d) results of the right ear from the same subject as in (c), and the additional structures are visualized (yellow arrows). However, note that this ear was clinically diagnosed with only an otoscope as being a normal middle ear. Red circles in (a–d) indicate the location and focus of the OCT beam.