Literature DB >> 34060619

pegIT - a web-based design tool for prime editing.

Mads Valdemar Anderson1, Jakob Haldrup1, Emil Aagaard Thomsen1, Jonas Holst Wolff1, Jacob Giehm Mikkelsen1.   

Abstract

Prime editing (PE) is a novel CRISPR-derived genome editing technique facilitating precision editing without double-stranded DNA breaks. PE, mediated by a Cas9-reverse transcriptase fusion protein, is based on dual-functioning prime editing guide RNAs (pegRNAs), serving both as guide molecules and as templates carrying the desired edits. Due to such diverse functions, manual pegRNA design is a subject to error and not suited for large-scale setups. Here, we present pegIT, a user-friendly web tool for rapid pegRNA design for numerous user-defined edits, including large-scale setups. pegIT is freely available at https://pegit.giehmlab.dk.
© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2021        PMID: 34060619     DOI: 10.1093/nar/gkab427

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  4 in total

Review 1.  Improvement of base editors and prime editors advances precision genome engineering in plants.

Authors:  Kai Hua; Peijin Han; Jian-Kang Zhu
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

Review 2.  Designing and executing prime editing experiments in mammalian cells.

Authors:  Jordan L Doman; Alexander A Sousa; Peyton B Randolph; Peter J Chen; David R Liu
Journal:  Nat Protoc       Date:  2022-08-08       Impact factor: 17.021

3.  Prime Editing for Precise Genome Engineering in Drosophila.

Authors:  Justin A Bosch; Norbert Perrimon
Journal:  Methods Mol Biol       Date:  2022

4.  Random-PE: an efficient integration of random sequences into mammalian genome by prime editing.

Authors:  Yaoge Jiao; Lifang Zhou; Rui Tao; Yanhong Wang; Yun Hu; Lurong Jiang; Li Li; Shaohua Yao
Journal:  Mol Biomed       Date:  2021-11-18
  4 in total

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