Literature DB >> 34046632

Drugging the undruggable: a computational chemist's view of KRASG12C.

Michael S Bodnarchuk1, Doyle J Cassar1, Jason G Kettle1, Graeme Robb1, Richard A Ward1.   

Abstract

In recent years, the emergence of targeted covalent inhibitors which bind to the G12C mutant of KRAS have offered a solution to this previously intractable target. Inhibitors of KRASG12C tend to be structurally complex, displaying features such as atropisomerism, chiral centres and a reactive covalent warhead. Such molecules result in lengthy and challenging syntheses, and as a consequence critical decisions need to be made at the design level to maximise the chances of success. Here we take a retrospective look into how computational chemistry can help guide and prioritise medicinal chemistry efforts in the context of a series of conformationally restricted tetracyclic quinolines. This journal is © The Royal Society of Chemistry.

Entities:  

Year:  2021        PMID: 34046632      PMCID: PMC8128063          DOI: 10.1039/d1md00055a

Source DB:  PubMed          Journal:  RSC Med Chem        ISSN: 2632-8682


  29 in total

1.  LowModeMD--implicit low-mode velocity filtering applied to conformational search of macrocycles and protein loops.

Authors:  Paul Labute
Journal:  J Chem Inf Model       Date:  2010-05-24       Impact factor: 4.956

2.  Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding.

Authors:  Tom Young; Robert Abel; Byungchan Kim; Bruce J Berne; Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-04       Impact factor: 11.205

3.  Expanding the Armory: Predicting and Tuning Covalent Warhead Reactivity.

Authors:  Richard Lonsdale; Jonathan Burgess; Nicola Colclough; Nichola L Davies; Eva M Lenz; Alexandra L Orton; Richard A Ward
Journal:  J Chem Inf Model       Date:  2017-11-21       Impact factor: 4.956

4.  Structure-Based Design and Pharmacokinetic Optimization of Covalent Allosteric Inhibitors of the Mutant GTPase KRASG12C.

Authors:  Jason G Kettle; Sharan K Bagal; Sue Bickerton; Michael S Bodnarchuk; Jason Breed; Rodrigo J Carbajo; Doyle J Cassar; Atanu Chakraborty; Sabina Cosulich; Iain Cumming; Michael Davies; Andrew Eatherton; Laura Evans; Lyman Feron; Shaun Fillery; Emma S Gleave; Frederick W Goldberg; Stephanie Harlfinger; Lyndsey Hanson; Martin Howard; Rachel Howells; Anne Jackson; Paul Kemmitt; Jennifer K Kingston; Scott Lamont; Hilary J Lewis; Songlei Li; Libin Liu; Derek Ogg; Christopher Phillips; Radek Polanski; Graeme Robb; David Robinson; Sarah Ross; James M Smith; Michael Tonge; Rebecca Whiteley; Junsheng Yang; Longfei Zhang; Xiliang Zhao
Journal:  J Med Chem       Date:  2020-02-13       Impact factor: 7.446

5.  The reactivity-driven biochemical mechanism of covalent KRASG12C inhibitors.

Authors:  Rasmus Hansen; Ulf Peters; Anjali Babbar; Yuching Chen; Jun Feng; Matthew R Janes; Lian-Sheng Li; Pingda Ren; Yi Liu; Patrick P Zarrinkar
Journal:  Nat Struct Mol Biol       Date:  2018-05-14       Impact factor: 15.369

6.  Discovery of a Covalent Inhibitor of KRASG12C (AMG 510) for the Treatment of Solid Tumors.

Authors:  Brian A Lanman; Jennifer R Allen; John G Allen; Albert K Amegadzie; Kate S Ashton; Shon K Booker; Jian Jeffrey Chen; Ning Chen; Michael J Frohn; Guy Goodman; David J Kopecky; Longbin Liu; Patricia Lopez; Jonathan D Low; Vu Ma; Ana E Minatti; Thomas T Nguyen; Nobuko Nishimura; Alexander J Pickrell; Anthony B Reed; Youngsook Shin; Aaron C Siegmund; Nuria A Tamayo; Christopher M Tegley; Mary C Walton; Hui-Ling Wang; Ryan P Wurz; May Xue; Kevin C Yang; Pragathi Achanta; Michael D Bartberger; Jude Canon; L Steven Hollis; John D McCarter; Christopher Mohr; Karen Rex; Anne Y Saiki; Tisha San Miguel; Laurie P Volak; Kevin H Wang; Douglas A Whittington; Stephan G Zech; J Russell Lipford; Victor J Cee
Journal:  J Med Chem       Date:  2019-12-24       Impact factor: 7.446

7.  Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer.

Authors:  Jay B Fell; John P Fischer; Brian R Baer; James F Blake; Karyn Bouhana; David M Briere; Karin D Brown; Laurence E Burgess; Aaron C Burns; Michael R Burkard; Harrah Chiang; Mark J Chicarelli; Adam W Cook; John J Gaudino; Jill Hallin; Lauren Hanson; Dylan P Hartley; Erik J Hicken; Gary P Hingorani; Ronald J Hinklin; Macedonio J Mejia; Peter Olson; Jennifer N Otten; Susan P Rhodes; Martha E Rodriguez; Pavel Savechenkov; Darin J Smith; Niranjan Sudhakar; Francis X Sullivan; Tony P Tang; Guy P Vigers; Lance Wollenberg; James G Christensen; Matthew A Marx
Journal:  J Med Chem       Date:  2020-04-06       Impact factor: 7.446

8.  Water Sites, Networks, And Free Energies with Grand Canonical Monte Carlo.

Authors:  Gregory A Ross; Michael S Bodnarchuk; Jonathan W Essex
Journal:  J Am Chem Soc       Date:  2015-11-20       Impact factor: 15.419

9.  Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment.

Authors:  Camilo E Quevedo; Abimael Cruz-Migoni; Nicolas Bery; Ami Miller; Tomoyuki Tanaka; Donna Petch; Carole J R Bataille; Lydia Y W Lee; Phillip S Fallon; Hanna Tulmin; Matthias T Ehebauer; Narcis Fernandez-Fuentes; Angela J Russell; Stephen B Carr; Simon E V Phillips; Terence H Rabbitts
Journal:  Nat Commun       Date:  2018-08-09       Impact factor: 14.919

10.  Discovery of potent SOS1 inhibitors that block RAS activation via disruption of the RAS-SOS1 interaction.

Authors:  Roman C Hillig; Brice Sautier; Jens Schroeder; Dieter Moosmayer; André Hilpmann; Christian M Stegmann; Nicolas D Werbeck; Hans Briem; Ulf Boemer; Joerg Weiske; Volker Badock; Julia Mastouri; Kirstin Petersen; Gerhard Siemeister; Jan D Kahmann; Dennis Wegener; Niels Böhnke; Knut Eis; Keith Graham; Lars Wortmann; Franz von Nussbaum; Benjamin Bader
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-25       Impact factor: 11.205

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