Literature DB >> 34028213

Design of Smart Antibody Mimetics with Photosensitive Switches.

Lian He1, Peng Tan1, Yun Huang2,3, Yubin Zhou1,3.   

Abstract

As two prominent examples of intracellular single-domain antibodies or antibody mimetics derived from synthetic protein scaffolds, monobodies and nanobodies are gaining wide applications in cell biology, structural biology, synthetic immunology, and theranostics. Herein, a generally applicable method to engineer light-controllable monobodies and nanobodies, designated as moonbody and sunbody, respectively, is introduced. These engineered antibody-like modular domains enable rapid and reversible antibody-antigen recognition by utilizing light. By the paralleled insertion of two light-oxygen-voltage domain 2 modules into a single sunbody and the use of bivalent sunbodies, the range of dynamic changes of photoswitchable sunbodies is substantially enhanced. Furthermore, the use of moonbodies or sunbodies to precisely control protein degradation, gene transcription, and base editing by harnessing the power of light is demonstrated.
© 2021 Wiley-VCH GmbH.

Entities:  

Keywords:  base editing; monobodies; nanobodies; optogenetics; protein design; synthetic biology

Year:  2021        PMID: 34028213      PMCID: PMC8295464          DOI: 10.1002/adbi.202000541

Source DB:  PubMed          Journal:  Adv Biol (Weinh)        ISSN: 2701-0198


  21 in total

1.  Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design.

Authors:  Ryan N Gilbreth; Khue Truong; Ikenna Madu; Akiko Koide; John B Wojcik; Nan-Sheng Li; Joseph A Piccirilli; Yuan Chen; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

2.  Optogenetic activation of intracellular antibodies for direct modulation of endogenous proteins.

Authors:  Daseuli Yu; Hansol Lee; Jongryul Hong; Hyunjin Jung; YoungJu Jo; Byung-Ha Oh; Byung Ouk Park; Won Do Heo
Journal:  Nat Methods       Date:  2019-10-14       Impact factor: 28.547

3.  The fibronectin type III domain as a scaffold for novel binding proteins.

Authors:  A Koide; C W Bailey; X Huang; S Koide
Journal:  J Mol Biol       Date:  1998-12-11       Impact factor: 5.469

4.  An efficient auxin-inducible degron system with low basal degradation in human cells.

Authors:  Shiqian Li; Xavier Prasanna; Veijo T Salo; Ilpo Vattulainen; Elina Ikonen
Journal:  Nat Methods       Date:  2019-08-26       Impact factor: 28.547

5.  Mixed lineage kinase domain-like protein mediates necrosis signaling downstream of RIP3 kinase.

Authors:  Liming Sun; Huayi Wang; Zhigao Wang; Sudan He; She Chen; Daohong Liao; Lai Wang; Jiacong Yan; Weilong Liu; Xiaoguang Lei; Xiaodong Wang
Journal:  Cell       Date:  2012-01-20       Impact factor: 41.582

Review 6.  Nanobody-based cancer therapy of solid tumors.

Authors:  Marta Kijanka; Bram Dorresteijn; Sabrina Oliveira; Paul M P van Bergen en Henegouwen
Journal:  Nanomedicine (Lond)       Date:  2015-01       Impact factor: 5.307

7.  A potent and highly specific FN3 monobody inhibitor of the Abl SH2 domain.

Authors:  John Wojcik; Oliver Hantschel; Florian Grebien; Ines Kaupe; Keiryn L Bennett; John Barkinge; Richard B Jones; Akiko Koide; Giulio Superti-Furga; Shohei Koide
Journal:  Nat Struct Mol Biol       Date:  2010-03-28       Impact factor: 15.369

8.  A robust pipeline for rapid production of versatile nanobody repertoires.

Authors:  Peter C Fridy; Yinyin Li; Sarah Keegan; Mary K Thompson; Ilona Nudelman; Johannes F Scheid; Marlene Oeffinger; Michel C Nussenzweig; David Fenyö; Brian T Chait; Michael P Rout
Journal:  Nat Methods       Date:  2014-11-02       Impact factor: 28.547

9.  A light- and calcium-gated transcription factor for imaging and manipulating activated neurons.

Authors:  Wenjing Wang; Craig P Wildes; Tanyaporn Pattarabanjird; Mateo I Sanchez; Gordon F Glober; Gillian A Matthews; Kay M Tye; Alice Y Ting
Journal:  Nat Biotechnol       Date:  2017-06-26       Impact factor: 54.908

10.  GO: a functional reporter system to identify and enrich base editing activity.

Authors:  Alyna Katti; Miguel Foronda; Jill Zimmerman; Bianca Diaz; Maria Paz Zafra; Sukanya Goswami; Lukas E Dow
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

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  5 in total

Review 1.  Optophysiology: Illuminating cell physiology with optogenetics.

Authors:  Peng Tan; Lian He; Yun Huang; Yubin Zhou
Journal:  Physiol Rev       Date:  2022-01-24       Impact factor: 37.312

2.  Structure-based design of a photoswitchable affibody scaffold.

Authors:  Ryan M Woloschuk; P Maximilian M Reed; Anna S I Jaikaran; Karl Z Demmans; Jeffrey Youn; Voula Kanelis; Maruti Uppalapati; G Andrew Woolley
Journal:  Protein Sci       Date:  2021-10-09       Impact factor: 6.725

Review 3.  The Roles of Optogenetics and Technology in Neurobiology: A Review.

Authors:  Wenqing Chen; Chen Li; Wanmin Liang; Yunqi Li; Zhuoheng Zou; Yunxuan Xie; Yangzeng Liao; Lin Yu; Qianyi Lin; Meiying Huang; Zesong Li; Xiao Zhu
Journal:  Front Aging Neurosci       Date:  2022-04-19       Impact factor: 5.702

4.  Combinatorial Approaches for Efficient Design of Photoswitchable Protein-Protein Interactions as In Vivo Actuators.

Authors:  Xiao Zhang; Yuxin Pan; Shoukai Kang; Liangcai Gu
Journal:  Front Bioeng Biotechnol       Date:  2022-02-08

5.  A Light-Activatable Photocaged Variant of the Ultra-High Affinity ALFA-Tag Nanobody.

Authors:  Benedikt Jedlitzke; Henning D Mootz
Journal:  Chembiochem       Date:  2022-04-27       Impact factor: 3.461

  5 in total

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